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Chlorine in PDB 3o52: Structure of the E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Tartrate

Protein crystallography data

The structure of Structure of the E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Tartrate, PDB code: 3o52 was solved by L.M.Amzel, S.B.Gabelli, A.N.Boto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.73 / 2.50
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 75.337, 103.218, 254.536, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 28.8

Other elements in 3o52:

The structure of Structure of the E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Tartrate also contains other interesting chemical elements:

Sodium (Na) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Tartrate (pdb code 3o52). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structure of the E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Tartrate, PDB code: 3o52:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3o52

Go back to Chlorine Binding Sites List in 3o52
Chlorine binding site 1 out of 4 in the Structure of the E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Tartrate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Tartrate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl192

b:69.9
occ:1.00
CB C:ASP191 3.6 67.0 1.0
CG C:ASP191 4.2 68.0 1.0
OD2 C:ASP191 4.3 69.2 1.0
C C:ASP191 4.5 67.2 1.0
CA C:ASP191 4.7 66.7 1.0

Chlorine binding site 2 out of 4 in 3o52

Go back to Chlorine Binding Sites List in 3o52
Chlorine binding site 2 out of 4 in the Structure of the E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Tartrate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Tartrate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl7113

b:71.4
occ:0.50
OE1 D:GLU103 4.1 66.8 1.0
OE2 D:GLU100 4.7 60.0 1.0
OE2 D:GLU103 4.7 64.9 1.0
CD D:GLU103 4.8 64.2 1.0

Chlorine binding site 3 out of 4 in 3o52

Go back to Chlorine Binding Sites List in 3o52
Chlorine binding site 3 out of 4 in the Structure of the E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Tartrate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of the E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Tartrate within 5.0Å range:

Chlorine binding site 4 out of 4 in 3o52

Go back to Chlorine Binding Sites List in 3o52
Chlorine binding site 4 out of 4 in the Structure of the E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Tartrate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of the E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Tartrate within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl7112

b:77.2
occ:1.00
CB E:VAL72 4.7 40.2 1.0
O E:VAL72 4.9 40.8 1.0
CG2 E:VAL72 4.9 39.7 1.0

Reference:

A.N.Boto, W.Xu, J.Jakoncic, A.Pannuri, T.Romeo, M.J.Bessman, S.B.Gabelli, L.M.Amzel. Structural Studies of the Nudix Gdp-Mannose Hydrolase From E. Coli Reveals A New Motif For Mannose Recognition. Proteins V. 79 2455 2011.
ISSN: ISSN 0887-3585
PubMed: 21638333
DOI: 10.1002/PROT.23069
Page generated: Sat Dec 12 09:59:00 2020

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