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Chlorine in PDB 3o61: Structure of the E100A E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Gdp-Mannose and Mg++

Protein crystallography data

The structure of Structure of the E100A E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Gdp-Mannose and Mg++, PDB code: 3o61 was solved by L.M.Amzel, S.B.Gabelli, A.N.Boto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.40 / 2.45
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.276, 55.824, 158.121, 90.00, 91.71, 90.00
R / Rfree (%) 22.4 / 29

Other elements in 3o61:

The structure of Structure of the E100A E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Gdp-Mannose and Mg++ also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the E100A E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Gdp-Mannose and Mg++ (pdb code 3o61). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of the E100A E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Gdp-Mannose and Mg++, PDB code: 3o61:

Chlorine binding site 1 out of 1 in 3o61

Go back to Chlorine Binding Sites List in 3o61
Chlorine binding site 1 out of 1 in the Structure of the E100A E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Gdp-Mannose and Mg++


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the E100A E.Coli Gdp-Mannose Hydrolase (Yffh) in Complex with Gdp-Mannose and Mg++ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl240

b:62.6
occ:1.00
CA C:GLY106 4.3 57.0 1.0
NH2 C:ARG141 4.7 82.9 1.0
O C:GLY106 4.8 61.1 1.0
O C:THR105 5.0 55.2 1.0

Reference:

A.N.Boto, W.Xu, J.Jakoncic, A.Pannuri, T.Romeo, M.J.Bessman, S.B.Gabelli, L.M.Amzel. Structural Studies of the Nudix Gdp-Mannose Hydrolase From E. Coli Reveals A New Motif For Mannose Recognition. Proteins V. 79 2455 2011.
ISSN: ISSN 0887-3585
PubMed: 21638333
DOI: 10.1002/PROT.23069
Page generated: Sat Dec 12 09:59:03 2020

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