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Chlorine in PDB 3o79: Crystal Structure of Wild-Type Rabbit Prp 126-230

Protein crystallography data

The structure of Crystal Structure of Wild-Type Rabbit Prp 126-230, PDB code: 3o79 was solved by B.Sweeting, A.Chakrabartty, E.F.Pai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.44 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 29.530, 86.170, 87.140, 90.00, 90.00, 90.00
R / Rfree (%) 15.7 / 21.8

Other elements in 3o79:

The structure of Crystal Structure of Wild-Type Rabbit Prp 126-230 also contains other interesting chemical elements:

Sodium (Na) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Wild-Type Rabbit Prp 126-230 (pdb code 3o79). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Wild-Type Rabbit Prp 126-230, PDB code: 3o79:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3o79

Go back to Chlorine Binding Sites List in 3o79
Chlorine binding site 1 out of 2 in the Crystal Structure of Wild-Type Rabbit Prp 126-230


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Wild-Type Rabbit Prp 126-230 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1

b:16.5
occ:1.00
NH1 A:ARG136 3.3 16.3 1.0
N A:ARG136 3.3 12.8 1.0
O A:HOH82 3.3 24.7 1.0
CG A:ARG136 3.6 11.0 1.0
CB A:ARG136 3.8 11.2 1.0
CD A:ARG136 3.8 11.8 1.0
CA A:SER135 4.0 16.9 0.5
CA A:SER135 4.0 16.2 0.5
CE A:MET154 4.1 15.5 1.0
CA A:ARG136 4.1 12.1 1.0
C A:SER135 4.2 15.4 1.0
CZ A:ARG136 4.3 16.0 1.0
NE A:ARG136 4.5 13.0 1.0
CB A:SER135 4.5 17.3 0.5
CB A:SER135 4.7 16.1 0.5
O A:MET134 4.7 14.6 1.0
O A:ARG136 5.0 11.7 1.0

Chlorine binding site 2 out of 2 in 3o79

Go back to Chlorine Binding Sites List in 3o79
Chlorine binding site 2 out of 2 in the Crystal Structure of Wild-Type Rabbit Prp 126-230


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Wild-Type Rabbit Prp 126-230 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl2

b:17.0
occ:1.00
NH1 B:ARG148 3.3 16.7 1.0
CD B:ARG148 3.8 16.6 1.0
CZ B:ARG148 4.1 19.8 1.0
NE B:ARG148 4.3 19.2 1.0
CG B:ARG148 4.9 14.6 1.0

Reference:

M.Q.Khan, B.Sweeting, V.K.Mulligan, P.E.Arslan, N.R.Cashman, E.F.Pai, A.Chakrabartty. Prion Disease Susceptibility Is Affected By Beta-Structure Folding Propensity and Local Side-Chain Interactions in Prp. Proc.Natl.Acad.Sci.Usa V. 107 19808 2010.
ISSN: ISSN 0027-8424
PubMed: 21041683
DOI: 10.1073/PNAS.1005267107
Page generated: Sat Dec 12 09:59:11 2020

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