Atomistry » Chlorine » PDB 3o6j-3ohg » 3oce
Atomistry »
  Chlorine »
    PDB 3o6j-3ohg »
      3oce »

Chlorine in PDB 3oce: Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis Bound to Cobalt

Enzymatic activity of Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis Bound to Cobalt

All present enzymatic activity of Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis Bound to Cobalt:
4.3.1.1;

Protein crystallography data

The structure of Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis Bound to Cobalt, PDB code: 3oce was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.58
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 95.330, 113.550, 236.860, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 24.5

Other elements in 3oce:

The structure of Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis Bound to Cobalt also contains other interesting chemical elements:

Cobalt (Co) 12 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis Bound to Cobalt (pdb code 3oce). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis Bound to Cobalt, PDB code: 3oce:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3oce

Go back to Chlorine Binding Sites List in 3oce
Chlorine binding site 1 out of 4 in the Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis Bound to Cobalt


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis Bound to Cobalt within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl474

b:42.9
occ:1.00
 N A:ALA43 3.6 17.7 1.0
CD A:PRO42 3.6 19.8 1.0
CB A:ALA43 3.7 15.7 1.0
CA A:ILE41 3.7 20.7 1.0
N A:PRO42 3.7 19.8 1.0
C A:ILE41 3.7 20.5 1.0
CG A:PRO42 3.9 18.9 1.0
CA A:ALA43 4.2 17.0 1.0
CB A:ILE41 4.3 20.3 1.0
O A:ILE41 4.3 20.2 1.0
O A:HIS40 4.4 22.4 1.0
CG2 A:ILE41 4.5 20.1 1.0
CD2 A:LEU369 4.5 11.5 1.0
C A:PRO42 4.6 18.2 1.0
CD1 A:LEU369 4.6 13.6 1.0
CA A:PRO42 4.6 19.2 1.0
CB A:LEU369 4.7 13.0 1.0
CG A:LEU369 4.8 14.3 1.0
OG A:SER155 4.8 23.1 1.0
N A:ILE41 4.9 21.7 1.0
CB A:PRO42 4.9 19.6 1.0

Chlorine binding site 2 out of 4 in 3oce

Go back to Chlorine Binding Sites List in 3oce
Chlorine binding site 2 out of 4 in the Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis Bound to Cobalt


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis Bound to Cobalt within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl474

b:23.8
occ:1.00
 N B:ALA43 3.4 20.1 1.0
CB B:ALA43 3.5 19.0 1.0
CD B:PRO42 3.6 22.6 1.0
NH1 B:ARG373 3.6 40.5 1.0
N B:PRO42 3.7 22.5 1.0
C B:ILE41 3.7 22.9 1.0
CA B:ILE41 3.9 22.9 1.0
CG B:PRO42 3.9 22.0 1.0
CA B:ALA43 4.0 19.3 1.0
O B:ILE41 4.2 23.4 1.0
CD1 B:LEU369 4.2 13.4 1.0
CB B:ILE41 4.4 22.3 1.0
C B:PRO42 4.4 20.9 1.0
CD2 B:LEU369 4.5 13.5 1.0
CA B:PRO42 4.5 21.7 1.0
CB B:LEU369 4.6 15.4 1.0
CG2 B:ILE41 4.7 21.7 1.0
CG B:LEU369 4.7 15.1 1.0
O B:HIS40 4.8 24.6 1.0
CB B:PRO42 4.8 21.6 1.0
CZ B:ARG373 5.0 41.4 1.0

Chlorine binding site 3 out of 4 in 3oce

Go back to Chlorine Binding Sites List in 3oce
Chlorine binding site 3 out of 4 in the Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis Bound to Cobalt


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis Bound to Cobalt within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl474

b:23.3
occ:1.00
 O C:HOH569 2.7 17.1 1.0
NH1 C:ARG373 3.1 39.8 1.0
CA C:ILE41 3.5 25.3 1.0
N C:ALA43 3.5 22.3 1.0
CD C:PRO42 3.6 24.7 1.0
C C:ILE41 3.6 25.0 1.0
N C:PRO42 3.6 24.7 1.0
CB C:ALA43 3.7 20.4 1.0
CB C:ILE41 3.9 24.8 1.0
CA C:ALA43 4.2 20.9 1.0
CG C:PRO42 4.2 24.0 1.0
CZ C:ARG373 4.2 40.1 1.0
CG2 C:ILE41 4.3 24.9 1.0
O C:ILE41 4.3 24.5 1.0
CD1 C:LEU369 4.3 13.6 1.0
CD2 C:LEU369 4.4 16.1 1.0
CB C:LEU369 4.5 16.5 1.0
C C:PRO42 4.5 23.4 1.0
NE C:ARG373 4.5 36.9 1.0
CA C:PRO42 4.6 24.0 1.0
CG C:LEU369 4.7 15.7 1.0
O C:HIS40 4.7 27.7 1.0
N C:ILE41 4.8 26.7 1.0

Chlorine binding site 4 out of 4 in 3oce

Go back to Chlorine Binding Sites List in 3oce
Chlorine binding site 4 out of 4 in the Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis Bound to Cobalt


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis Bound to Cobalt within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl474

b:27.8
occ:1.00
 N D:ALA43 3.5 23.0 1.0
CB D:ALA43 3.6 22.0 1.0
CA D:ILE41 3.8 25.0 1.0
C D:ILE41 3.8 25.2 1.0
N D:PRO42 3.8 25.1 1.0
CD D:PRO42 3.8 25.4 1.0
CD1 D:LEU369 4.0 17.6 1.0
CG D:PRO42 4.2 24.8 1.0
CA D:ALA43 4.2 22.5 1.0
CB D:ILE41 4.3 24.3 1.0
O D:ILE41 4.4 24.8 1.0
CG2 D:ILE41 4.4 23.2 1.0
CD2 D:LEU369 4.4 16.8 1.0
C D:PRO42 4.6 23.9 1.0
CG D:LEU369 4.6 18.9 1.0
O D:HIS40 4.6 27.6 1.0
CB D:LEU369 4.6 17.1 1.0
CA D:PRO42 4.7 24.5 1.0
OG D:SER155 4.9 27.7 1.0
N D:ILE41 5.0 26.3 1.0

Reference:

T.E.Edwards, T.L.Arakaki, B.Sankaran. Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis Bound to Cobalt To Be Published.
Page generated: Sat Dec 12 09:59:31 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy