Atomistry » Chlorine » PDB 3o6j-3ohg » 3ocf
Atomistry »
  Chlorine »
    PDB 3o6j-3ohg »
      3ocf »

Chlorine in PDB 3ocf: Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis in Native Form

Enzymatic activity of Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis in Native Form

All present enzymatic activity of Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis in Native Form:
4.3.1.1;

Protein crystallography data

The structure of Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis in Native Form, PDB code: 3ocf was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 86.230, 86.460, 105.160, 90.00, 91.91, 90.00
R / Rfree (%) 17.1 / 22.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis in Native Form (pdb code 3ocf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis in Native Form, PDB code: 3ocf:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3ocf

Go back to Chlorine Binding Sites List in 3ocf
Chlorine binding site 1 out of 4 in the Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis in Native Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis in Native Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl458

b:23.5
occ:1.00
 O A:HOH581 2.9 29.3 1.0
NH2 A:ARG373 3.3 45.5 1.0
N A:ALA43 3.4 19.1 1.0
CA A:ILE41 3.5 22.5 1.0
C A:ILE41 3.5 22.9 1.0
N A:PRO42 3.6 21.8 1.0
CB A:ALA43 3.7 19.1 1.0
O A:HOH531 3.7 29.3 1.0
CD A:PRO42 3.8 22.1 1.0
CB A:ILE41 3.9 23.2 1.0
CA A:ALA43 4.1 19.3 1.0
CD1 A:LEU369 4.1 20.1 1.0
O A:ILE41 4.2 22.9 1.0
CG A:PRO42 4.2 21.5 1.0
CG2 A:ILE41 4.3 20.2 1.0
CB A:LEU369 4.3 19.5 1.0
CD2 A:LEU369 4.4 21.8 1.0
CZ A:ARG373 4.4 45.6 1.0
C A:PRO42 4.4 20.3 1.0
CG A:LEU369 4.5 20.9 1.0
CA A:PRO42 4.5 21.6 1.0
O A:HIS40 4.5 25.0 1.0
N A:ILE41 4.7 23.8 1.0
NH1 A:ARG373 4.9 48.1 1.0
OG A:SER155 5.0 21.5 1.0

Chlorine binding site 2 out of 4 in 3ocf

Go back to Chlorine Binding Sites List in 3ocf
Chlorine binding site 2 out of 4 in the Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis in Native Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis in Native Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl458

b:29.9
occ:1.00
 NH1 B:ARG373 3.3 49.5 1.0
N B:ALA43 3.4 22.9 1.0
CB B:ALA43 3.5 21.6 1.0
CD B:PRO42 3.5 22.6 1.0
N B:PRO42 3.6 23.0 1.0
CA B:ILE41 3.6 22.7 1.0
C B:ILE41 3.6 23.2 1.0
O B:HOH537 3.8 36.7 1.0
CG B:PRO42 4.0 22.3 1.0
CA B:ALA43 4.1 22.6 1.0
CB B:ILE41 4.1 22.4 1.0
O B:ILE41 4.3 23.7 1.0
CG2 B:ILE41 4.3 21.3 1.0
CD1 B:LEU369 4.4 16.3 1.0
C B:PRO42 4.4 23.8 1.0
CD2 B:LEU369 4.5 20.9 1.0
CA B:PRO42 4.5 23.3 1.0
CB B:LEU369 4.5 18.1 1.0
CZ B:ARG373 4.5 47.6 1.0
O B:HIS40 4.6 23.5 1.0
CG B:LEU369 4.7 18.6 1.0
N B:ILE41 4.8 23.3 1.0
NH2 B:ARG373 4.9 49.3 1.0
OG B:SER155 4.9 31.3 1.0
CB B:PRO42 4.9 23.7 1.0

Chlorine binding site 3 out of 4 in 3ocf

Go back to Chlorine Binding Sites List in 3ocf
Chlorine binding site 3 out of 4 in the Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis in Native Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis in Native Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl458

b:33.3
occ:1.00
 N C:ALA43 3.5 29.6 1.0
CD C:PRO42 3.5 31.5 1.0
N C:PRO42 3.5 31.6 1.0
C C:ILE41 3.5 31.4 1.0
CA C:ILE41 3.5 30.8 1.0
CB C:ALA43 3.7 27.6 1.0
NH1 C:ARG373 4.1 52.2 1.0
CD1 C:LEU369 4.1 25.2 1.0
CB C:ILE41 4.1 30.9 1.0
CG C:PRO42 4.1 32.1 1.0
CA C:ALA43 4.2 29.4 1.0
O C:ILE41 4.2 30.7 1.0
CD2 C:LEU369 4.3 21.3 1.0
C C:PRO42 4.5 31.3 1.0
CG C:LEU369 4.5 24.9 1.0
CB C:LEU369 4.5 23.1 1.0
CA C:PRO42 4.5 32.6 1.0
CG2 C:ILE41 4.5 29.6 1.0
O C:HIS40 4.6 33.0 1.0
N C:ILE41 4.7 32.1 1.0
CZ C:ARG373 5.0 52.8 1.0

Chlorine binding site 4 out of 4 in 3ocf

Go back to Chlorine Binding Sites List in 3ocf
Chlorine binding site 4 out of 4 in the Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis in Native Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis in Native Form within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl458

b:24.4
occ:1.00
 N D:ALA43 3.4 20.5 1.0
CB D:ALA43 3.5 19.9 1.0
CA D:ILE41 3.6 20.8 1.0
CD D:PRO42 3.6 20.9 1.0
C D:ILE41 3.6 20.4 1.0
N D:PRO42 3.7 20.0 1.0
NH2 D:ARG373 3.7 46.1 1.0
CB D:ILE41 4.0 20.7 1.0
CA D:ALA43 4.1 20.8 1.0
CG D:PRO42 4.1 20.3 1.0
O D:ILE41 4.1 20.2 1.0
CG2 D:ILE41 4.3 19.9 1.0
CD1 D:LEU369 4.3 17.0 1.0
CB D:LEU369 4.5 17.6 1.0
CD2 D:LEU369 4.5 19.2 1.0
C D:PRO42 4.5 21.0 1.0
CG D:LEU369 4.6 19.4 1.0
CA D:PRO42 4.6 20.4 1.0
O D:HIS40 4.6 22.0 1.0
CZ D:ARG373 4.8 45.6 1.0
N D:ILE41 4.8 21.4 1.0
N D:LEU44 5.0 20.9 1.0
OG D:SER155 5.0 21.6 1.0

Reference:

T.E.Edwards, T.L.Arakaki, B.Sankaran. Crystal Structure of Fumarate Lyase:Delta Crystallin From Brucella Melitensis in Native Form To Be Published.
Page generated: Sun Jul 21 01:35:28 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy