Chlorine in PDB 3on6: Crystal Structure of An Exo-Alpha-1,6-Mannosidase (BACOVA_03626) From Bacteroides Ovatus at 1.70 A Resolution
Protein crystallography data
The structure of Crystal Structure of An Exo-Alpha-1,6-Mannosidase (BACOVA_03626) From Bacteroides Ovatus at 1.70 A Resolution, PDB code: 3on6
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.04 /
1.70
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
51.613,
91.138,
99.124,
90.00,
92.35,
90.00
|
R / Rfree (%)
|
13.3 /
16.6
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of An Exo-Alpha-1,6-Mannosidase (BACOVA_03626) From Bacteroides Ovatus at 1.70 A Resolution
(pdb code 3on6). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of An Exo-Alpha-1,6-Mannosidase (BACOVA_03626) From Bacteroides Ovatus at 1.70 A Resolution, PDB code: 3on6:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 3on6
Go back to
Chlorine Binding Sites List in 3on6
Chlorine binding site 1 out
of 4 in the Crystal Structure of An Exo-Alpha-1,6-Mannosidase (BACOVA_03626) From Bacteroides Ovatus at 1.70 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of An Exo-Alpha-1,6-Mannosidase (BACOVA_03626) From Bacteroides Ovatus at 1.70 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl483
b:32.5
occ:1.00
|
NZ
|
A:LYS425
|
2.9
|
14.4
|
0.5
|
N
|
A:GLN481
|
3.3
|
23.1
|
1.0
|
CE
|
A:LYS425
|
3.4
|
14.1
|
0.5
|
O
|
A:SER479
|
3.8
|
14.4
|
1.0
|
CA
|
A:ILE480
|
3.8
|
16.0
|
1.0
|
CD
|
A:LYS425
|
3.8
|
12.6
|
0.5
|
NZ
|
A:LYS425
|
3.9
|
15.5
|
0.5
|
CE
|
A:LYS421
|
3.9
|
14.9
|
1.0
|
NZ
|
A:LYS421
|
4.0
|
14.2
|
1.0
|
CD
|
A:LYS425
|
4.0
|
13.6
|
0.5
|
C
|
A:ILE480
|
4.1
|
19.2
|
1.0
|
CB
|
A:GLN481
|
4.1
|
27.4
|
1.0
|
CE
|
A:LYS425
|
4.2
|
14.6
|
0.5
|
CA
|
A:GLN481
|
4.3
|
26.6
|
1.0
|
CG
|
A:GLN481
|
4.3
|
31.3
|
1.0
|
O
|
A:HOH1285
|
4.4
|
38.1
|
1.0
|
CG2
|
A:ILE480
|
4.4
|
12.6
|
1.0
|
CB
|
A:ILE480
|
4.6
|
14.5
|
1.0
|
C
|
A:SER479
|
4.6
|
14.1
|
1.0
|
N
|
A:ILE480
|
4.7
|
15.0
|
1.0
|
O
|
A:GLN481
|
4.8
|
28.5
|
1.0
|
CG
|
A:LYS425
|
4.8
|
11.6
|
0.5
|
CG
|
A:LYS425
|
5.0
|
10.6
|
0.5
|
|
Chlorine binding site 2 out
of 4 in 3on6
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Chlorine Binding Sites List in 3on6
Chlorine binding site 2 out
of 4 in the Crystal Structure of An Exo-Alpha-1,6-Mannosidase (BACOVA_03626) From Bacteroides Ovatus at 1.70 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of An Exo-Alpha-1,6-Mannosidase (BACOVA_03626) From Bacteroides Ovatus at 1.70 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl484
b:22.4
occ:1.00
|
ND2
|
A:ASN310
|
3.2
|
8.5
|
1.0
|
O
|
A:HOH941
|
3.3
|
13.8
|
1.0
|
CB
|
A:ASN310
|
3.8
|
8.1
|
1.0
|
CG
|
A:ASN310
|
3.9
|
9.2
|
1.0
|
CG2
|
A:THR307
|
4.4
|
7.9
|
1.0
|
CA
|
A:THR307
|
4.5
|
7.6
|
1.0
|
O
|
A:HOH1439
|
4.7
|
19.2
|
1.0
|
O
|
A:HOH508
|
4.8
|
19.5
|
1.0
|
CB
|
A:THR307
|
4.8
|
7.6
|
1.0
|
O
|
A:HOH1585
|
4.9
|
26.0
|
1.0
|
O
|
A:THR307
|
5.0
|
6.8
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 3on6
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Chlorine Binding Sites List in 3on6
Chlorine binding site 3 out
of 4 in the Crystal Structure of An Exo-Alpha-1,6-Mannosidase (BACOVA_03626) From Bacteroides Ovatus at 1.70 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of An Exo-Alpha-1,6-Mannosidase (BACOVA_03626) From Bacteroides Ovatus at 1.70 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl485
b:18.2
occ:1.00
|
O
|
A:HOH1057
|
2.7
|
21.0
|
1.0
|
O
|
A:HOH672
|
2.9
|
11.6
|
1.0
|
O
|
B:HOH658
|
3.1
|
12.3
|
1.0
|
O
|
B:HOH532
|
3.1
|
9.9
|
1.0
|
N
|
A:ASP246
|
3.3
|
7.8
|
1.0
|
O
|
B:HOH565
|
3.7
|
8.3
|
1.0
|
CA
|
A:ASP246
|
3.8
|
8.0
|
1.0
|
NH1
|
B:ARG238
|
3.8
|
12.6
|
1.0
|
CZ
|
B:ARG238
|
3.9
|
11.9
|
1.0
|
NE2
|
A:GLN233
|
4.0
|
10.2
|
1.0
|
N
|
A:ASN245
|
4.0
|
6.2
|
1.0
|
CG
|
B:ARG238
|
4.1
|
8.7
|
1.0
|
CB
|
B:ARG238
|
4.2
|
8.2
|
1.0
|
O
|
B:HOH733
|
4.2
|
15.4
|
1.0
|
NH2
|
B:ARG238
|
4.2
|
12.5
|
1.0
|
CA
|
B:ARG238
|
4.3
|
7.2
|
1.0
|
C
|
A:ASN245
|
4.3
|
7.5
|
1.0
|
CA
|
A:ASN245
|
4.4
|
6.9
|
1.0
|
NE
|
B:ARG238
|
4.5
|
11.5
|
1.0
|
CB
|
A:ASP246
|
4.6
|
9.0
|
1.0
|
C
|
A:THR244
|
4.6
|
6.7
|
1.0
|
O
|
B:PRO395
|
4.7
|
9.1
|
1.0
|
OD1
|
A:ASP246
|
4.8
|
19.1
|
1.0
|
CD
|
B:ARG238
|
4.8
|
12.2
|
1.0
|
N
|
B:ALA239
|
4.9
|
6.5
|
1.0
|
O
|
B:HIS396
|
4.9
|
7.0
|
1.0
|
O
|
A:MSE243
|
4.9
|
10.8
|
1.0
|
C
|
A:ASP246
|
5.0
|
7.7
|
1.0
|
CA
|
A:THR244
|
5.0
|
6.5
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 3on6
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Chlorine Binding Sites List in 3on6
Chlorine binding site 4 out
of 4 in the Crystal Structure of An Exo-Alpha-1,6-Mannosidase (BACOVA_03626) From Bacteroides Ovatus at 1.70 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of An Exo-Alpha-1,6-Mannosidase (BACOVA_03626) From Bacteroides Ovatus at 1.70 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl482
b:27.8
occ:1.00
|
N
|
B:GLN481
|
3.3
|
22.3
|
1.0
|
NZ
|
B:LYS425
|
3.3
|
15.1
|
0.5
|
O
|
B:HOH1276
|
3.5
|
41.0
|
1.0
|
CE
|
B:LYS425
|
3.6
|
13.3
|
0.5
|
NZ
|
B:LYS425
|
3.8
|
13.2
|
0.5
|
CA
|
B:ILE480
|
3.8
|
16.6
|
1.0
|
CD
|
B:LYS425
|
3.8
|
11.5
|
0.5
|
O
|
B:SER479
|
3.8
|
16.5
|
1.0
|
CE
|
B:LYS425
|
3.8
|
14.3
|
0.5
|
CE
|
B:LYS421
|
4.0
|
15.2
|
1.0
|
NZ
|
B:LYS421
|
4.0
|
18.9
|
1.0
|
C
|
B:ILE480
|
4.0
|
19.3
|
1.0
|
CB
|
B:GLN481
|
4.2
|
27.1
|
1.0
|
CD
|
B:LYS425
|
4.2
|
11.8
|
0.5
|
CA
|
B:GLN481
|
4.2
|
26.3
|
1.0
|
CG
|
B:GLN481
|
4.5
|
30.9
|
1.0
|
CG2
|
B:ILE480
|
4.5
|
13.5
|
1.0
|
O
|
B:GLN481
|
4.6
|
28.5
|
1.0
|
CB
|
B:ILE480
|
4.7
|
16.1
|
1.0
|
C
|
B:SER479
|
4.7
|
15.9
|
1.0
|
N
|
B:ILE480
|
4.7
|
16.1
|
1.0
|
O
|
B:HOH1245
|
4.8
|
32.0
|
1.0
|
CG
|
B:LYS425
|
4.9
|
10.9
|
0.5
|
C
|
B:GLN481
|
4.9
|
27.7
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Sun Jul 21 01:48:39 2024
|