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Chlorine in PDB 3ow2: Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Protein crystallography data

The structure of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit, PDB code: 3ow2 was solved by Z.F.Kanyo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.70
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 211.853, 298.000, 574.985, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 3ow2:

The structure of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit also contains other interesting chemical elements:

Fluorine (F) 1 atom
Strontium (Sr) 98 atoms
Magnesium (Mg) 61 atoms
Potassium (K) 1 atom
Cadmium (Cd) 4 atoms
Sodium (Na) 26 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit (pdb code 3ow2). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 13 binding sites of Chlorine where determined in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit, PDB code: 3ow2:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 13 in 3ow2

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Chlorine binding site 1 out of 13 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Cl8076

b:58.3
occ:1.00
 OG J:SER33 3.5 42.4 1.0
N2 0:G2582 3.5 35.5 1.0
NZ J:LYS14 3.5 37.2 1.0
CG J:PRO45 3.6 29.6 1.0
O J:ILE32 3.6 35.9 1.0
C2 0:A2596 3.7 30.2 1.0
CD J:LYS14 3.7 34.0 1.0
N3 0:A2596 3.8 31.1 1.0
CE J:LYS14 3.9 37.6 1.0
CA J:SER33 4.0 37.7 1.0
CB J:PRO45 4.0 28.9 1.0
CB J:SER33 4.0 39.4 1.0
C1' 0:U2597 4.2 32.6 1.0
N3 0:A2583 4.5 30.3 1.0
O2' 0:U2597 4.5 35.7 1.0
O2 0:U2597 4.6 33.5 1.0
C J:ILE32 4.6 36.0 1.0
CG J:LYS14 4.6 31.7 1.0
O4' 0:U2597 4.7 32.8 1.0
C2 0:G2582 4.7 33.4 1.0
N J:VAL34 4.8 37.3 1.0
N1 0:A2596 4.8 30.1 1.0
N J:SER33 4.8 36.9 1.0
CD J:PRO45 4.8 28.9 1.0
C1' 0:A2583 4.8 27.3 1.0
N1 0:U2597 5.0 31.8 1.0
C2' 0:U2597 5.0 32.9 1.0
CB J:LYS14 5.0 31.0 1.0
C J:SER33 5.0 37.6 1.0

Chlorine binding site 2 out of 13 in 3ow2

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Chlorine binding site 2 out of 13 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Cl8077

b:55.5
occ:1.00
 N1 0:A1329 3.2 24.7 1.0
N2 0:G1299 3.6 27.1 1.0
O2' 0:G1300 3.7 26.0 1.0
N6 0:A1328 3.7 23.3 1.0
C2 0:A1329 3.8 22.4 1.0
C1' 0:G1300 3.9 27.0 1.0
O4' 0:G1300 4.0 28.9 1.0
C6 0:A1329 4.3 24.3 1.0
N1 0:A1330 4.3 24.2 1.0
N3 0:G1299 4.4 27.3 1.0
C2 0:G1299 4.4 26.6 1.0
C2' 0:G1300 4.5 27.7 1.0
N6 0:A1329 4.5 26.7 1.0
C4' 0:G1300 4.6 28.0 1.0
C2 0:A1330 4.8 24.6 1.0
MG 0:MG8041 4.8 52.6 1.0
C6 0:A1328 5.0 23.0 1.0

Chlorine binding site 3 out of 13 in 3ow2

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Chlorine binding site 3 out of 13 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Cl8078

b:63.6
occ:1.00
 O2' 0:G644 2.9 26.0 1.0
ND1 K:HIS13 2.9 21.6 1.0
C2' 0:G644 3.7 23.7 1.0
N9 0:G644 3.8 19.6 1.0
CG K:HIS13 3.8 21.3 1.0
CG K:GLN7 3.8 28.2 1.0
CB K:HIS13 3.8 20.6 1.0
C4 0:G644 3.8 20.2 1.0
CE1 K:HIS13 3.9 22.8 1.0
C8 0:G644 4.0 19.1 1.0
C1' 0:G644 4.2 21.6 1.0
C5 0:G644 4.2 21.9 1.0
N3 0:G644 4.2 20.2 1.0
N7 0:G644 4.3 21.3 1.0
CB K:GLN7 4.5 26.8 1.0
CG K:LYS4 4.5 31.7 1.0
O K:HIS13 4.5 21.4 1.0
CD K:GLN7 4.6 29.1 1.0
OE1 K:GLN7 4.8 29.6 1.0
C2 0:G644 4.8 21.9 1.0
CA K:LYS4 4.9 28.3 1.0
C6 0:G644 4.9 22.8 1.0
CA K:HIS13 4.9 20.4 1.0
CD2 K:HIS13 5.0 22.1 1.0

Chlorine binding site 4 out of 13 in 3ow2

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Chlorine binding site 4 out of 13 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Cl8079

b:56.9
occ:1.00
 N6 0:A1598 3.3 40.4 1.0
N2 0:G1646 3.4 43.2 1.0
N6 0:A1597 3.5 34.7 1.0
C1' 0:G1647 3.9 37.3 1.0
O4' 0:G1647 4.0 36.6 1.0
C1' 0:G1540 4.2 44.1 1.0
C6 0:A1598 4.2 38.8 1.0
N7 0:A1597 4.3 36.3 1.0
C2 0:G1646 4.3 42.8 1.0
N3 0:G1646 4.4 42.4 1.0
C6 0:A1597 4.5 35.3 1.0
N3 0:G1540 4.5 44.4 1.0
O2' 0:G1540 4.7 45.3 1.0
O4' 0:G1540 4.7 43.5 1.0
N9 0:G1647 4.7 38.3 1.0
C5 0:A1597 4.8 35.4 1.0
N9 0:G1540 4.8 43.9 1.0
O2' 0:G1647 4.9 34.6 1.0
N1 0:A1598 4.9 39.4 1.0
C5 0:A1598 4.9 38.5 1.0
C4 0:G1540 5.0 44.2 1.0

Chlorine binding site 5 out of 13 in 3ow2

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Chlorine binding site 5 out of 13 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Cl8080

b:51.3
occ:1.00
 O2' 0:C594 2.9 37.7 1.0
NH1 X:ARG115 3.2 34.2 1.0
CG X:ARG115 3.6 32.1 1.0
O4' 0:U595 3.7 37.9 1.0
CD X:ARG115 3.8 31.8 1.0
NH2 X:ARG122 3.9 41.2 1.0
C4' 0:U595 3.9 37.2 1.0
C5' 0:U595 4.0 35.2 1.0
C2' 0:C594 4.1 38.2 1.0
CZ X:ARG115 4.3 35.0 1.0
NE X:ARG115 4.5 34.1 1.0
O2 0:C594 4.7 42.3 1.0
C1' 0:C594 4.8 39.3 1.0
CZ X:ARG122 4.9 39.1 1.0
NE2 X:GLN119 4.9 33.1 1.0
C1' 0:U595 4.9 38.6 1.0

Chlorine binding site 6 out of 13 in 3ow2

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Chlorine binding site 6 out of 13 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:74.1
occ:1.00
 NZ A:LYS178 3.2 37.0 1.0
CE A:LYS175 3.8 24.3 1.0
CD A:LYS178 3.9 34.1 1.0
CE A:LYS178 3.9 34.9 1.0
CZ A:PHE169 4.0 26.4 1.0
CE1 A:PHE169 4.2 27.8 1.0
SD A:MET179 4.4 35.7 1.0
CD A:LYS175 4.6 23.2 1.0
CE A:MET179 4.8 36.4 1.0
OP2 0:G1878 4.9 31.4 1.0

Chlorine binding site 7 out of 13 in 3ow2

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Chlorine binding site 7 out of 13 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl201

b:49.9
occ:1.00
 NZ D:LYS146 3.2 56.6 1.0
N M:LYS38 3.3 52.0 1.0
OD1 M:ASN107 3.5 45.9 1.0
O M:LYS38 3.5 54.4 1.0
CD M:ARG37 3.6 48.6 1.0
CD D:LYS146 3.6 53.9 1.0
CA M:ARG37 3.7 49.5 1.0
CB M:ARG37 3.9 49.4 1.0
ND2 M:ASN107 3.9 45.1 1.0
CE D:LYS146 3.9 55.8 1.0
C M:ARG37 4.0 50.7 1.0
CG M:ASN107 4.0 45.2 1.0
CA M:LYS38 4.3 53.3 1.0
C M:LYS38 4.4 54.4 1.0
CG M:ARG37 4.4 49.1 1.0
NE M:ARG37 4.4 49.1 1.0
CG M:LYS38 4.5 53.9 1.0
CB M:LYS38 4.9 53.3 1.0
O M:ALA36 4.9 46.5 1.0
CG D:LYS146 5.0 52.9 1.0

Chlorine binding site 8 out of 13 in 3ow2

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Chlorine binding site 8 out of 13 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Cl202

b:58.8
occ:1.00
 N I:ILE127 2.9 40.6 1.0
N I:LYS128 3.3 36.7 1.0
CG E:PRO36 3.7 42.3 1.0
CA I:ILE127 3.7 39.6 1.0
CA I:ASN126 3.8 43.8 1.0
C I:ASN126 3.8 42.0 1.0
CB I:ILE127 3.9 39.5 1.0
CG I:LYS128 4.0 32.5 1.0
C I:ILE127 4.0 38.1 1.0
CB I:LYS128 4.1 33.7 1.0
CA I:LYS128 4.3 35.4 1.0
OD1 I:ASN126 4.4 51.5 1.0
O I:SER125 4.4 45.5 1.0
CB I:ASN126 4.5 45.6 1.0
CG2 I:ILE127 4.5 37.9 1.0
CB E:PRO36 4.6 42.0 1.0
CD I:LYS128 4.8 29.8 1.0
CD E:PRO36 4.8 42.9 1.0
N I:ASN126 4.9 44.6 1.0
CG I:ASN126 4.9 49.5 1.0
O I:ASN126 5.0 41.0 1.0

Chlorine binding site 9 out of 13 in 3ow2

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Chlorine binding site 9 out of 13 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Cl203

b:62.3
occ:1.00
 N I:TYR69 3.3 40.5 1.0
N I:ASN65 3.4 33.9 1.0
CA I:GLY64 3.5 34.8 1.0
O I:ASN65 3.5 33.5 1.0
CA I:GLY68 3.5 37.6 1.0
C I:GLY64 4.0 34.6 1.0
C I:GLY68 4.0 39.6 1.0
NA I:NA201 4.3 54.9 1.0
CA I:TYR69 4.4 41.9 1.0
O I:ILE63 4.4 38.3 1.0
C I:TYR69 4.4 44.3 1.0
C I:ASN65 4.4 33.2 1.0
OP1 0:A2678 4.5 39.5 1.0
O3' 0:A2677 4.5 38.2 1.0
CA I:ASN65 4.5 33.2 1.0
N I:GLY68 4.5 35.4 1.0
O I:TYR69 4.6 44.5 1.0
C5' 0:A2677 4.7 41.8 1.0
N I:GLY64 4.7 35.7 1.0
CB I:TYR69 4.8 40.6 1.0
N I:PHE70 4.8 46.5 1.0

Chlorine binding site 10 out of 13 in 3ow2

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Chlorine binding site 10 out of 13 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cl202

b:51.6
occ:1.00
 ND2 L:ASN106 2.5 52.3 1.0
N L:VAL114 3.3 30.2 1.0
OG1 L:THR159 3.4 32.9 1.0
CA L:LEU157 3.5 39.2 1.0
N L:ARG158 3.5 35.9 1.0
N L:THR159 3.5 33.8 1.0
C L:LEU157 3.5 37.7 1.0
CA L:ARG113 3.6 29.7 1.0
CG L:ASN106 3.7 45.3 1.0
CG2 L:THR159 3.7 36.1 1.0
CG L:ARG158 3.8 31.7 1.0
C L:ARG113 4.0 30.1 1.0
CB L:THR159 4.0 33.1 1.0
CB L:ARG113 4.0 28.7 1.0
N L:LEU157 4.1 41.0 1.0
OD1 L:ASN106 4.2 47.4 1.0
O L:LEU157 4.2 38.0 1.0
CA L:ARG158 4.3 34.2 1.0
CA L:THR159 4.3 32.9 1.0
CB L:VAL114 4.3 29.5 1.0
C L:ARG158 4.3 34.7 1.0
CG2 L:VAL114 4.4 29.6 1.0
CA L:VAL114 4.4 29.9 1.0
CD L:ARG158 4.5 29.1 1.0
O L:LEU112 4.5 31.4 1.0
CG L:ARG113 4.6 27.3 1.0
CB L:LEU157 4.6 37.7 1.0
CB L:ARG158 4.6 32.0 1.0
CB L:ASN106 4.7 41.2 1.0
N L:ARG113 4.9 30.9 1.0
O L:VAL114 4.9 31.0 1.0

Reference:

Z.F.Kanyo, N/A. N/A N/A.
Page generated: Sun Jul 21 01:59:20 2024

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