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Chlorine in PDB 3oyo: Crystal Structure of Hemopexin Fold Protein CP4 From Cow Pea

Protein crystallography data

The structure of Crystal Structure of Hemopexin Fold Protein CP4 From Cow Pea, PDB code: 3oyo was solved by V.Gaur, V.Chanana, D.M.Salunke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.22 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 125.087, 60.138, 67.574, 90.00, 111.18, 90.00
R / Rfree (%) 20.5 / 24.6

Other elements in 3oyo:

The structure of Crystal Structure of Hemopexin Fold Protein CP4 From Cow Pea also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Hemopexin Fold Protein CP4 From Cow Pea (pdb code 3oyo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Hemopexin Fold Protein CP4 From Cow Pea, PDB code: 3oyo:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3oyo

Go back to Chlorine Binding Sites List in 3oyo
Chlorine binding site 1 out of 2 in the Crystal Structure of Hemopexin Fold Protein CP4 From Cow Pea


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Hemopexin Fold Protein CP4 From Cow Pea within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl229

b:17.7
occ:1.00
O A:HOH231 2.7 15.2 1.0
CB A:SER122 3.5 3.9 1.0
O A:CYS176 3.5 7.6 1.0
CA A:SER122 3.6 4.9 1.0
O A:SER67 3.6 3.6 1.0
N A:ALA123 3.6 5.8 1.0
N A:SER67 3.6 11.9 1.0
N A:CYS176 3.6 10.9 1.0
N A:ALA9 3.6 9.4 1.0
CA A:ALA8 3.8 9.6 1.0
O A:ALA123 3.8 7.3 1.0
CA A:ALA175 3.9 8.8 1.0
O A:ALA9 3.9 9.9 1.0
CA A:CYS66 4.0 11.9 1.0
C A:SER122 4.1 3.8 1.0
CB A:ALA175 4.2 10.8 1.0
C A:ALA8 4.2 9.6 1.0
CB A:ALA8 4.2 8.4 1.0
C A:ALA175 4.3 9.3 1.0
C A:CYS66 4.3 11.7 1.0
OG A:SER67 4.4 8.5 1.0
SG A:CYS66 4.4 15.1 1.0
C A:SER67 4.5 10.9 1.0
C A:CYS176 4.5 11.0 1.0
O A:ASN7 4.6 8.9 1.0
CA A:SER67 4.6 11.4 1.0
CB A:CYS66 4.7 12.3 1.0
CA A:CYS176 4.7 11.8 1.0
CA A:ALA9 4.7 8.6 1.0
C A:ALA123 4.7 7.0 1.0
O A:ASP121 4.7 3.6 1.0
C A:ALA9 4.7 9.0 1.0
CA A:ALA123 4.7 6.8 1.0
SG A:CYS176 4.7 11.2 1.0
O A:ASP174 4.8 8.7 1.0
OG A:SER122 4.9 5.5 1.0
N A:SER122 4.9 4.2 1.0
N A:ALA8 4.9 9.9 1.0
N A:CYS66 5.0 11.8 1.0

Chlorine binding site 2 out of 2 in 3oyo

Go back to Chlorine Binding Sites List in 3oyo
Chlorine binding site 2 out of 2 in the Crystal Structure of Hemopexin Fold Protein CP4 From Cow Pea


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Hemopexin Fold Protein CP4 From Cow Pea within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl229

b:17.9
occ:1.00
O B:HOH231 2.8 16.4 1.0
N B:ALA9 3.5 9.4 1.0
O B:SER67 3.5 3.0 1.0
N B:SER67 3.5 10.7 1.0
N B:ALA123 3.6 8.1 1.0
CA B:SER122 3.6 8.2 1.0
CA B:ALA8 3.6 8.9 1.0
N B:CYS176 3.7 9.4 1.0
CB B:SER122 3.7 8.4 1.0
O B:CYS176 3.7 8.2 1.0
O B:ALA9 3.8 9.1 1.0
CA B:ALA175 3.8 6.4 1.0
CA B:CYS66 3.9 10.5 1.0
O B:ALA123 3.9 9.0 1.0
CB B:ALA8 4.0 10.5 1.0
C B:ALA8 4.1 9.5 1.0
C B:SER122 4.1 7.5 1.0
CB B:ALA175 4.1 4.9 1.0
C B:CYS66 4.2 11.0 1.0
C B:ALA175 4.3 7.3 1.0
OG B:SER67 4.3 8.5 1.0
O B:ASN7 4.4 11.8 1.0
SG B:CYS66 4.4 8.4 1.0
C B:SER67 4.4 10.9 1.0
CA B:SER67 4.5 10.4 1.0
CA B:ALA9 4.6 9.5 1.0
C B:ALA9 4.6 9.7 1.0
C B:CYS176 4.6 10.0 1.0
CB B:CYS66 4.7 6.1 1.0
CA B:ALA123 4.7 8.3 1.0
CA B:CYS176 4.7 11.2 1.0
O B:ASP121 4.7 7.2 1.0
O B:ASP174 4.8 6.7 1.0
N B:ALA8 4.8 9.6 1.0
C B:ALA123 4.8 8.3 1.0
SG B:CYS176 4.8 12.4 1.0
N B:CYS66 4.9 10.5 1.0
N B:SER122 4.9 7.4 1.0
C B:ASN7 5.0 10.8 1.0
N B:ALA175 5.0 7.1 1.0
O B:ASP65 5.0 4.1 1.0

Reference:

V.Gaur, V.Chanana, A.Jain, D.M.Salunke. The Structure of A Haemopexin-Fold Protein From Cow Pea (Vigna Unguiculata) Suggests Functional Diversity of Haemopexins in Plants Acta Crystallogr.,Sect.F V. 67 193 2011.
ISSN: ESSN 1744-3091
PubMed: 21301085
DOI: 10.1107/S1744309110051250
Page generated: Sat Dec 12 10:01:16 2020

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