Atomistry » Chlorine » PDB 3oxh-3p41 » 3oyz
Atomistry »
  Chlorine »
    PDB 3oxh-3p41 »
      3oyz »

Chlorine in PDB 3oyz: Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex

Enzymatic activity of Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex

All present enzymatic activity of Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex:
2.3.3.9;

Protein crystallography data

The structure of Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex, PDB code: 3oyz was solved by B.R.Howard, C.Bracken, A.Neighbor, G.Thomas, K.K.Lamlenn, H.L.Schubert, F.G.Whitby, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.95
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 154.788, 154.788, 142.144, 90.00, 90.00, 120.00
R / Rfree (%) 20.3 / 23.9

Other elements in 3oyz:

The structure of Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Potassium (K) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex (pdb code 3oyz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex, PDB code: 3oyz:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3oyz

Go back to Chlorine Binding Sites List in 3oyz
Chlorine binding site 1 out of 4 in the Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl701

b:45.3
occ:1.00
 NH2 A:ARG95 3.2 35.3 1.0
NH1 A:ARG95 3.4 33.6 1.0
O A:ARG89 3.6 33.3 1.0
CZ A:ARG95 3.7 34.8 1.0
CG A:PRO92 3.8 34.6 1.0
CD A:PRO92 3.8 30.3 1.0
C A:ASP90 3.8 35.1 1.0
O A:ASP90 3.9 35.1 1.0
CA A:ASP90 4.0 34.5 1.0
N A:SER91 4.3 34.2 1.0
N A:PRO92 4.4 30.9 1.0
C A:ARG89 4.5 32.1 1.0
O A:HOH438 4.6 33.3 1.0
N A:ASP90 4.7 30.7 1.0
CA A:SER91 4.8 33.9 1.0
C A:SER91 4.9 32.1 1.0

Chlorine binding site 2 out of 4 in 3oyz

Go back to Chlorine Binding Sites List in 3oyz
Chlorine binding site 2 out of 4 in the Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl702

b:37.1
occ:1.00
 NH2 A:ARG170 3.3 39.4 1.0
O A:HOH574 3.7 54.6 1.0
CZ A:ARG170 4.2 49.1 1.0
NH1 A:ARG170 4.2 46.8 1.0
O A:HOH519 4.5 39.2 1.0

Chlorine binding site 3 out of 4 in 3oyz

Go back to Chlorine Binding Sites List in 3oyz
Chlorine binding site 3 out of 4 in the Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl704

b:47.6
occ:1.00
 ND1 A:HIS101 3.0 42.7 1.0
N A:VAL86 3.2 34.7 1.0
ND2 A:ASN50 3.2 36.8 1.0
CG2 A:VAL86 3.7 36.6 1.0
CA A:MET85 3.7 36.6 1.0
CB A:HIS101 3.8 36.1 1.0
CG A:HIS101 3.8 40.9 1.0
CB A:ASN50 3.9 36.9 1.0
C A:MET85 3.9 37.6 1.0
CG1 A:VAL86 3.9 37.3 1.0
CG A:ASN50 4.0 41.0 1.0
CE1 A:HIS101 4.1 36.1 1.0
CB A:MET85 4.1 35.1 1.0
CB A:VAL86 4.2 36.8 1.0
CE A:MET85 4.2 38.4 1.0
SD A:MET85 4.2 43.6 1.0
CA A:VAL86 4.2 34.0 1.0
CA A:GLY98 4.4 33.0 1.0
O A:ASN50 4.5 37.9 1.0
O A:GLN97 4.7 38.2 1.0
CG A:MET85 4.8 43.4 1.0
O A:ARG84 4.9 37.2 1.0
C A:ASN50 4.9 38.3 1.0
N A:MET85 5.0 36.6 1.0

Chlorine binding site 4 out of 4 in 3oyz

Go back to Chlorine Binding Sites List in 3oyz
Chlorine binding site 4 out of 4 in the Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl705

b:34.5
occ:1.00
 K A:K602 3.1 37.1 1.0
O A:HOH518 3.2 55.2 1.0
O A:HOH462 3.2 30.1 1.0
N A:ALA227 3.3 27.9 1.0
CA A:VAL226 3.8 29.2 1.0
O A:GLY252 3.9 31.9 1.0
C A:VAL226 4.0 29.5 1.0
CB A:ALA227 4.0 26.1 1.0
O A:CYS225 4.1 31.3 1.0
CB A:ALA220 4.1 27.1 1.0
CA A:ALA227 4.2 27.5 1.0
CG1 A:VAL226 4.4 28.2 1.0
O A:ALA227 4.6 32.6 1.0
OG A:SER221 4.6 38.6 1.0
CB A:VAL226 4.6 30.0 1.0
N A:VAL226 4.8 29.7 1.0
C A:CYS225 4.9 30.5 1.0
C A:ALA227 5.0 30.5 1.0
O A:SER217 5.0 28.6 1.0

Reference:

C.D.Bracken, A.M.Neighbor, K.K.Lamlenn, G.C.Thomas, H.L.Schubert, F.G.Whitby, B.R.Howard. Crystal Structures of A Halophilic Archaeal Malate Synthase From Haloferax Volcanii and Comparisons with Isoforms A and G. Bmc Struct.Biol. V. 11 23 2011.
ISSN: ESSN 1472-6807
PubMed: 21569248
DOI: 10.1186/1472-6807-11-23
Page generated: Sun Jul 21 02:03:28 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy