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Chlorine in PDB 3ozd: Crystal Structure of Human 5'-Deoxy-5'-Methyladenosine Phosphorylase in Complex with Pcl-Phenylthiodadmeimma

Enzymatic activity of Crystal Structure of Human 5'-Deoxy-5'-Methyladenosine Phosphorylase in Complex with Pcl-Phenylthiodadmeimma

All present enzymatic activity of Crystal Structure of Human 5'-Deoxy-5'-Methyladenosine Phosphorylase in Complex with Pcl-Phenylthiodadmeimma:
2.4.2.28;

Protein crystallography data

The structure of Crystal Structure of Human 5'-Deoxy-5'-Methyladenosine Phosphorylase in Complex with Pcl-Phenylthiodadmeimma, PDB code: 3ozd was solved by M.Ho, R.Guan, S.C.Almo, V.L.Schramm, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.10
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 121.539, 121.539, 87.661, 90.00, 90.00, 120.00
R / Rfree (%) 20 / 25.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human 5'-Deoxy-5'-Methyladenosine Phosphorylase in Complex with Pcl-Phenylthiodadmeimma (pdb code 3ozd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Human 5'-Deoxy-5'-Methyladenosine Phosphorylase in Complex with Pcl-Phenylthiodadmeimma, PDB code: 3ozd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3ozd

Go back to Chlorine Binding Sites List in 3ozd
Chlorine binding site 1 out of 2 in the Crystal Structure of Human 5'-Deoxy-5'-Methyladenosine Phosphorylase in Complex with Pcl-Phenylthiodadmeimma


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human 5'-Deoxy-5'-Methyladenosine Phosphorylase in Complex with Pcl-Phenylthiodadmeimma within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl284

b:58.1
occ:1.00
CL1 A:4CT284 0.0 58.1 1.0
C11 A:4CT284 1.8 50.3 1.0
C9' A:4CT284 2.8 48.6 1.0
C13 A:4CT284 2.8 49.4 1.0
CD2 A:HIS65 3.2 61.0 1.0
CG A:HIS65 3.6 59.6 1.0
NE2 A:HIS65 3.6 61.2 1.0
C8' A:4CT284 4.1 45.3 1.0
C14 A:4CT284 4.1 45.8 1.0
CD2 A:LEU237 4.2 32.8 1.0
ND1 A:HIS65 4.2 59.9 1.0
CB A:HIS65 4.2 58.5 1.0
CE1 A:HIS65 4.2 61.8 1.0
C7' A:4CT284 4.6 42.7 1.0

Chlorine binding site 2 out of 2 in 3ozd

Go back to Chlorine Binding Sites List in 3ozd
Chlorine binding site 2 out of 2 in the Crystal Structure of Human 5'-Deoxy-5'-Methyladenosine Phosphorylase in Complex with Pcl-Phenylthiodadmeimma


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human 5'-Deoxy-5'-Methyladenosine Phosphorylase in Complex with Pcl-Phenylthiodadmeimma within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl284

b:66.6
occ:1.00
CL1 B:4CT284 0.0 66.6 1.0
C11 B:4CT284 1.8 62.0 1.0
C9' B:4CT284 2.8 61.4 1.0
C13 B:4CT284 2.8 61.1 1.0
NE2 B:HIS65 2.9 65.5 1.0
CD2 B:HIS65 3.1 65.0 1.0
C8' B:4CT284 4.1 59.1 1.0
CE1 B:HIS65 4.1 65.4 1.0
C14 B:4CT284 4.1 58.4 1.0
CG B:HIS65 4.4 64.1 1.0
C7' B:4CT284 4.6 56.9 1.0
ND1 B:HIS65 4.8 65.5 1.0
CD2 B:HIS61 5.0 57.0 1.0

Reference:

M.Ho, R.Guan, S.C.Almo, V.L.Schramm. Crystal Structure of Human 5'-Deoxy-5'-Methyladenosine Phosphorylase To Be Published.
Page generated: Sat Dec 12 10:01:21 2020

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