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Chlorine in PDB 3p1v: Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution, PDB code: 3p1v was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.91 / 1.93
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 72.919, 84.963, 139.758, 90.00, 99.56, 90.00
R / Rfree (%) 17 / 20.7

Other elements in 3p1v:

The structure of Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution also contains other interesting chemical elements:

Potassium (K) 2 atoms
Zinc (Zn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution (pdb code 3p1v). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution, PDB code: 3p1v:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 3p1v

Go back to Chlorine Binding Sites List in 3p1v
Chlorine binding site 1 out of 3 in the Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl430

b:52.1
occ:1.00
N A:THR227 3.4 24.5 1.0
OG1 A:THR227 3.5 33.8 1.0
C A:THR242 3.5 27.3 1.0
O A:THR242 3.6 25.7 1.0
N A:ALA243 3.7 23.9 1.0
CA A:SER226 3.9 24.7 1.0
CA A:THR242 3.9 24.0 1.0
O A:PRO225 3.9 30.4 1.0
C A:SER226 4.1 29.7 1.0
N A:THR242 4.1 24.2 1.0
CA A:ALA243 4.1 25.3 1.0
O A:GLN241 4.1 25.7 1.0
CB A:THR227 4.1 34.0 1.0
C A:GLN241 4.1 28.8 1.0
CA A:THR227 4.3 26.8 1.0
O A:HOH1003 4.5 50.8 1.0
C A:PRO225 4.7 29.8 1.0
N A:SER226 4.7 26.8 1.0
CB A:SER226 4.8 23.8 1.0
OG A:SER226 5.0 23.9 1.0

Chlorine binding site 2 out of 3 in 3p1v

Go back to Chlorine Binding Sites List in 3p1v
Chlorine binding site 2 out of 3 in the Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl431

b:54.7
occ:1.00
O A:HOH621 2.7 35.7 1.0
O A:HOH794 2.8 46.1 1.0
O A:HOH804 2.8 43.8 1.0
N A:TYR292 3.1 17.8 1.0
O A:HOH1044 3.4 54.9 1.0
CB A:TYR292 3.6 20.8 1.0
CA A:ILE291 3.7 20.3 1.0
C A:ILE291 3.9 21.8 1.0
CA A:TYR292 3.9 19.8 1.0
CG2 A:ILE291 4.1 24.4 1.0
CB A:HIS315 4.2 18.0 1.0
O A:HOH537 4.3 30.8 1.0
O A:HIS315 4.4 22.4 1.0
O A:GLY290 4.4 18.4 1.0
CB A:ILE291 4.4 23.2 1.0
CB A:SER92 4.4 21.6 1.0
ND1 A:HIS315 4.5 21.7 1.0
C A:HIS315 4.7 22.4 1.0
CG A:HIS315 4.7 20.5 1.0
CA A:HIS315 4.7 18.0 1.0
N A:ILE291 4.7 20.5 1.0
O A:LEU320 4.8 22.2 1.0
CG1 A:ILE291 4.8 21.6 1.0
CH2 A:TRP342 4.9 25.5 1.0
OG A:SER92 4.9 33.1 1.0
C A:GLY290 5.0 21.5 1.0

Chlorine binding site 3 out of 3 in 3p1v

Go back to Chlorine Binding Sites List in 3p1v
Chlorine binding site 3 out of 3 in the Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl432

b:56.4
occ:1.00
N B:TYR292 3.4 40.5 1.0
CB B:TYR292 3.7 40.1 1.0
CA B:ILE291 4.0 41.6 1.0
CG2 B:ILE291 4.1 42.0 1.0
CB B:SER92 4.1 41.5 1.0
CA B:TYR292 4.2 39.0 1.0
C B:ILE291 4.2 43.1 1.0
CB B:ILE291 4.6 43.8 1.0
OG B:SER92 4.6 51.2 1.0
CB B:HIS315 4.6 44.5 1.0
CH2 B:TRP342 4.7 47.3 1.0
O B:GLY290 4.7 50.7 1.0
O B:HIS315 4.7 42.9 1.0
ND1 B:HIS315 4.8 52.5 1.0
CZ2 B:TRP342 4.9 47.4 1.0
O B:LEU320 4.9 50.2 1.0
CG1 B:ILE291 5.0 44.9 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sun Jul 21 02:08:17 2024

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