Chlorine in PDB 3p4z: Time-Dependent and Protein-Directed in Situ Growth of Gold Nanoparticles in A Single Crystal of Lysozyme

All present enzymatic activity of Time-Dependent and Protein-Directed in Situ Growth of Gold Nanoparticles in A Single Crystal of Lysozyme:
3.2.1.17;

The structure of Time-Dependent and Protein-Directed in Situ Growth of Gold Nanoparticles in A Single Crystal of Lysozyme, PDB code: 3p4z was solved by H.Wei, Z.Wang, J.Zhang, S.House, Y.-G.Gao, L.Yang, H.Robinson, L.H.Tan, H.Xing, C.Hou, I.M.Robertson, J.-M.Zuo, Y.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 1.60
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.584, 78.584, 37.121, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 23.6

The structure of Time-Dependent and Protein-Directed in Situ Growth of Gold Nanoparticles in A Single Crystal of Lysozyme also contains other interesting chemical elements:

Gold

(Au)

2 atoms

The binding sites of Chlorine atom in the Time-Dependent and Protein-Directed in Situ Growth of Gold Nanoparticles in A Single Crystal of Lysozyme (pdb code 3p4z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Time-Dependent and Protein-Directed in Situ Growth of Gold Nanoparticles in A Single Crystal of Lysozyme, PDB code: 3p4z:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Time-Dependent and Protein-Directed in Situ Growth of Gold Nanoparticles in A Single Crystal of Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Time-Dependent and Protein-Directed in Situ Growth of Gold Nanoparticles in A Single Crystal of Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl302 b:34.8 occ:1.00 AU A:AU301 2.3 72.5 1.0 O A:HOH2115 3.0 43.3 1.0 O A:HOH2185 3.3 55.8 1.0 N A:ILE88 3.5 22.4 1.0 CA A:ASP87 3.8 26.6 1.0 CG1 A:ILE88 3.9 22.1 1.0 O A:SER86 4.0 29.8 1.0 O A:HOH2182 4.1 77.3 1.0 CB A:ALA11 4.1 22.5 1.0 C A:ASP87 4.2 22.4 1.0 CZ A:PHE3 4.2 22.9 1.0 CG2 A:ILE88 4.2 24.5 1.0 CG A:ASP87 4.3 41.5 1.0 NE2 A:HIS15 4.3 28.3 1.0 CB A:ILE88 4.4 23.6 1.0 OD1 A:ASP87 4.4 28.6 1.0 CB A:ASP87 4.5 34.2 1.0 CA A:ILE88 4.5 22.7 1.0 OD2 A:ASP87 4.6 43.5 1.0 CE2 A:PHE3 4.7 22.4 1.0 N A:ASP87 4.8 22.7 1.0 C A:SER86 4.8 27.8 1.0 CD1 A:ILE88 4.8 20.9 1.0 O A:HOH2150 4.8 55.6 1.0 CD2 A:HIS15 4.8 27.8 1.0

Chlorine binding site 2 out of 2 in the Time-Dependent and Protein-Directed in Situ Growth of Gold Nanoparticles in A Single Crystal of Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Time-Dependent and Protein-Directed in Situ Growth of Gold Nanoparticles in A Single Crystal of Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl303 b:50.5 occ:1.00 ND1 A:HIS15 1.9 42.5 1.0 O A:HOH2237 2.7 68.2 1.0 CE1 A:HIS15 2.8 33.6 1.0 CG A:HIS15 3.0 38.0 1.0 CB A:HIS15 3.5 33.7 1.0 CA A:HIS15 3.5 33.6 1.0 NE2 A:HIS15 3.9 28.3 1.0 O A:ARG14 4.0 32.9 1.0 O A:HOH2058 4.0 39.4 1.0 CD2 A:HIS15 4.0 27.8 1.0 N A:HIS15 4.4 29.9 1.0 CG2 A:THR89 4.5 26.2 1.0 C A:HIS15 4.5 29.5 1.0 C A:ARG14 4.5 32.6 1.0 O A:HIS15 4.7 30.0 1.0 OG1 A:THR89 4.7 31.8 1.0 NH2 A:ARG14 4.9 41.1 1.0

H.Wei, Z.Wang, J.Zhang, S.House, Y.G.Gao, L.Yang, H.Robinson, L.H.Tan, H.Xing, C.Hou, I.M.Robertson, J.M.Zuo, Y.Lu. Time-Dependent, Protein-Directed Growth of Gold Nanoparticles Within A Single Crystal of Lysozyme. Nat Nanotechnol V. 6 93 2011.
ISSN: ISSN 1748-3387
PubMed: 21278750
DOI: 10.1038/NNANO.2010.280