Chlorine in PDB 3pf6: The Structure of Uncharacterized Protein Pp-LUZ7_GP033 From Pseudomonas Phage LUZ7.
Protein crystallography data
The structure of The Structure of Uncharacterized Protein Pp-LUZ7_GP033 From Pseudomonas Phage LUZ7., PDB code: 3pf6
was solved by
M.E.Cuff,
E.Evdokimova,
F.Liu,
A.Edwards,
A.Savchenko,
A.Joachimiak,
Midwest Center For Structural Genomics (Mcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
31.64 /
1.60
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
31.886,
40.822,
46.268,
70.14,
84.61,
83.86
|
R / Rfree (%)
|
13.5 /
16.5
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the The Structure of Uncharacterized Protein Pp-LUZ7_GP033 From Pseudomonas Phage LUZ7.
(pdb code 3pf6). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
The Structure of Uncharacterized Protein Pp-LUZ7_GP033 From Pseudomonas Phage LUZ7., PDB code: 3pf6:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 3pf6
Go back to
Chlorine Binding Sites List in 3pf6
Chlorine binding site 1 out
of 5 in the The Structure of Uncharacterized Protein Pp-LUZ7_GP033 From Pseudomonas Phage LUZ7.
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of The Structure of Uncharacterized Protein Pp-LUZ7_GP033 From Pseudomonas Phage LUZ7. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl62
b:50.1
occ:1.00
|
NE
|
B:ARG29
|
3.0
|
20.0
|
1.0
|
ND1
|
B:HIS37
|
3.0
|
22.9
|
1.0
|
NH2
|
B:ARG29
|
3.5
|
24.1
|
1.0
|
CZ
|
B:ARG29
|
3.7
|
21.0
|
1.0
|
CG
|
B:HIS37
|
3.9
|
20.9
|
1.0
|
CB
|
B:HIS37
|
3.9
|
19.9
|
1.0
|
CZ
|
C:PHE4
|
4.0
|
18.1
|
1.0
|
CD
|
B:ARG29
|
4.0
|
17.3
|
1.0
|
CE1
|
B:HIS37
|
4.0
|
23.2
|
1.0
|
CG
|
B:ARG29
|
4.1
|
15.4
|
1.0
|
CA
|
B:HIS37
|
4.4
|
18.0
|
1.0
|
CB
|
C:GLN3
|
4.5
|
34.3
|
1.0
|
CE1
|
C:PHE4
|
4.7
|
18.8
|
1.0
|
CE2
|
C:PHE4
|
4.7
|
20.8
|
1.0
|
NH1
|
B:ARG29
|
5.0
|
18.4
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 3pf6
Go back to
Chlorine Binding Sites List in 3pf6
Chlorine binding site 2 out
of 5 in the The Structure of Uncharacterized Protein Pp-LUZ7_GP033 From Pseudomonas Phage LUZ7.
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of The Structure of Uncharacterized Protein Pp-LUZ7_GP033 From Pseudomonas Phage LUZ7. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl62
b:20.1
occ:1.00
|
O
|
B:HOH223
|
2.9
|
33.4
|
1.0
|
NZ
|
C:LYS22
|
3.2
|
14.2
|
1.0
|
O
|
B:HOH190
|
3.3
|
26.1
|
1.0
|
O
|
C:HOH195
|
3.3
|
35.0
|
1.0
|
CA
|
B:SER2
|
3.6
|
12.3
|
1.0
|
CE
|
C:LYS22
|
3.6
|
17.4
|
1.0
|
C
|
B:GLY0
|
3.7
|
15.7
|
1.0
|
N
|
B:SER2
|
3.7
|
11.4
|
1.0
|
N
|
B:MSE1
|
3.7
|
13.4
|
1.0
|
C
|
B:MSE1
|
3.8
|
10.7
|
1.0
|
CA
|
B:GLY0
|
3.8
|
17.1
|
1.0
|
CB
|
B:SER2
|
3.9
|
14.8
|
1.0
|
O
|
B:MSE1
|
3.9
|
10.5
|
1.0
|
O
|
B:GLY0
|
4.1
|
17.0
|
1.0
|
CA
|
B:MSE1
|
4.4
|
11.9
|
1.0
|
OE2
|
C:GLU26
|
4.5
|
15.6
|
1.0
|
O
|
B:HOH167
|
4.7
|
28.3
|
1.0
|
C
|
B:SER2
|
4.9
|
12.1
|
1.0
|
O
|
B:HOH278
|
5.0
|
44.6
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 3pf6
Go back to
Chlorine Binding Sites List in 3pf6
Chlorine binding site 3 out
of 5 in the The Structure of Uncharacterized Protein Pp-LUZ7_GP033 From Pseudomonas Phage LUZ7.
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of The Structure of Uncharacterized Protein Pp-LUZ7_GP033 From Pseudomonas Phage LUZ7. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl63
b:19.3
occ:1.00
|
O
|
C:HOH64
|
2.7
|
16.2
|
1.0
|
ND1
|
C:HIS37
|
2.9
|
10.2
|
1.0
|
NE
|
C:ARG29
|
3.1
|
9.1
|
1.0
|
NE2
|
B:GLN3
|
3.1
|
11.2
|
1.0
|
NH2
|
C:ARG29
|
3.3
|
10.8
|
1.0
|
CZ
|
C:ARG29
|
3.6
|
10.6
|
1.0
|
CB
|
C:HIS37
|
3.7
|
10.0
|
1.0
|
CG
|
C:HIS37
|
3.7
|
10.1
|
1.0
|
CZ
|
B:PHE4
|
3.8
|
10.4
|
1.0
|
CG
|
B:GLN3
|
3.8
|
10.2
|
1.0
|
CD
|
B:GLN3
|
3.9
|
10.5
|
1.0
|
CE1
|
C:HIS37
|
4.0
|
11.2
|
1.0
|
CA
|
C:HIS37
|
4.0
|
9.7
|
1.0
|
CD
|
C:ARG29
|
4.1
|
10.8
|
1.0
|
CE2
|
B:PHE4
|
4.4
|
10.3
|
1.0
|
CG
|
C:ARG29
|
4.4
|
7.8
|
1.0
|
CE1
|
B:PHE4
|
4.5
|
9.6
|
1.0
|
N
|
C:HIS37
|
4.6
|
11.0
|
1.0
|
CD2
|
C:HIS37
|
4.9
|
11.1
|
1.0
|
NH1
|
C:ARG29
|
4.9
|
11.4
|
1.0
|
CB
|
B:GLN3
|
5.0
|
10.2
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 3pf6
Go back to
Chlorine Binding Sites List in 3pf6
Chlorine binding site 4 out
of 5 in the The Structure of Uncharacterized Protein Pp-LUZ7_GP033 From Pseudomonas Phage LUZ7.
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of The Structure of Uncharacterized Protein Pp-LUZ7_GP033 From Pseudomonas Phage LUZ7. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl62
b:17.4
occ:1.00
|
O
|
D:HOH75
|
2.7
|
19.0
|
1.0
|
ND1
|
D:HIS37
|
3.0
|
9.9
|
1.0
|
NE
|
D:ARG29
|
3.1
|
9.8
|
1.0
|
NE2
|
A:GLN3
|
3.1
|
10.2
|
1.0
|
NH2
|
D:ARG29
|
3.3
|
10.3
|
1.0
|
CZ
|
D:ARG29
|
3.6
|
10.3
|
1.0
|
CB
|
D:HIS37
|
3.6
|
10.9
|
1.0
|
CG
|
D:HIS37
|
3.7
|
11.7
|
1.0
|
CG
|
A:GLN3
|
3.8
|
10.5
|
1.0
|
CZ
|
A:PHE4
|
3.8
|
10.6
|
1.0
|
CD
|
A:GLN3
|
4.0
|
11.0
|
1.0
|
CA
|
D:HIS37
|
4.0
|
10.0
|
1.0
|
CE1
|
D:HIS37
|
4.1
|
12.3
|
1.0
|
CD
|
D:ARG29
|
4.1
|
9.4
|
1.0
|
CG2
|
B:THR17
|
4.3
|
8.5
|
0.5
|
CE2
|
A:PHE4
|
4.5
|
9.7
|
1.0
|
CG
|
D:ARG29
|
4.5
|
7.6
|
1.0
|
CE1
|
A:PHE4
|
4.6
|
9.7
|
1.0
|
N
|
D:HIS37
|
4.6
|
10.5
|
1.0
|
NH1
|
D:ARG29
|
4.9
|
10.1
|
1.0
|
CB
|
A:GLN3
|
5.0
|
10.3
|
1.0
|
CD2
|
D:HIS37
|
5.0
|
12.0
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 3pf6
Go back to
Chlorine Binding Sites List in 3pf6
Chlorine binding site 5 out
of 5 in the The Structure of Uncharacterized Protein Pp-LUZ7_GP033 From Pseudomonas Phage LUZ7.
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of The Structure of Uncharacterized Protein Pp-LUZ7_GP033 From Pseudomonas Phage LUZ7. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl63
b:17.8
occ:1.00
|
O
|
A:HOH153
|
3.0
|
30.5
|
1.0
|
NZ
|
D:LYS22
|
3.3
|
12.7
|
1.0
|
O
|
B:HOH131
|
3.3
|
24.3
|
1.0
|
O
|
D:HOH193
|
3.3
|
28.5
|
1.0
|
CA
|
A:SER2
|
3.5
|
12.5
|
1.0
|
N
|
A:SER2
|
3.6
|
12.5
|
1.0
|
C
|
A:GLY0
|
3.7
|
15.3
|
1.0
|
CE
|
D:LYS22
|
3.7
|
12.9
|
1.0
|
N
|
A:MSE1
|
3.7
|
12.6
|
1.0
|
C
|
A:MSE1
|
3.8
|
10.9
|
1.0
|
CA
|
A:GLY0
|
3.8
|
16.2
|
1.0
|
CB
|
A:SER2
|
3.8
|
14.1
|
1.0
|
O
|
A:MSE1
|
4.0
|
9.9
|
1.0
|
O
|
A:GLY0
|
4.1
|
15.8
|
1.0
|
CA
|
A:MSE1
|
4.4
|
11.4
|
1.0
|
OE2
|
D:GLU26
|
4.5
|
15.3
|
1.0
|
O
|
B:HOH133
|
4.5
|
29.7
|
1.0
|
C
|
A:SER2
|
4.9
|
12.5
|
1.0
|
N
|
A:GLY0
|
4.9
|
18.2
|
1.0
|
OG
|
A:SER2
|
5.0
|
15.5
|
1.0
|
|
Reference:
M.E.Cuff,
E.Evdokimova,
F.Liu,
A.Edwards,
A.Savchenko,
A.Joachimiak.
The Structure of Uncharacterized Protein Pp-LUZ7_GP033 From Pseudomonas Phage LUZ7. To Be Published.
Page generated: Sun Jul 21 02:20:39 2024
|