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Chlorine in PDB 3pfc: Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid

Protein crystallography data

The structure of Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid, PDB code: 3pfc was solved by P.J.Stogios, K.K.Lai, C.Vu, X.Xu, H.Cui, S.Molloy, C.F.Gonzalez, A.Yakunin, A.Savchenko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.65 / 1.75
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 72.046, 85.402, 80.981, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 17.9

Other elements in 3pfc:

The structure of Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid also contains other interesting chemical elements:

Sodium (Na) 3 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid (pdb code 3pfc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 11 binding sites of Chlorine where determined in the Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid, PDB code: 3pfc:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 11 in 3pfc

Go back to Chlorine Binding Sites List in 3pfc
Chlorine binding site 1 out of 11 in the Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl254

b:76.4
occ:1.00
OD1 A:ASN54 2.7 41.6 1.0
O A:ARG51 3.0 23.0 1.0
O A:HOH420 3.0 39.3 1.0
CD2 A:PHE21 3.3 47.6 1.0
N A:PHE21 3.3 22.3 1.0
CB A:PRO20 3.6 20.4 1.0
CA A:PRO20 3.8 20.9 1.0
CG A:ASN54 3.8 39.4 1.0
C A:PRO20 4.0 21.0 1.0
CA A:ASN54 4.0 23.0 1.0
CB A:PHE21 4.1 34.5 1.0
CE2 A:PHE21 4.1 49.7 1.0
CG A:PHE21 4.1 43.6 1.0
C A:ARG51 4.2 22.6 1.0
N A:ASN54 4.2 21.6 1.0
CA A:PHE21 4.3 28.4 1.0
CG A:ARG51 4.3 32.3 1.0
CB A:ASN54 4.4 30.3 1.0
ND2 A:ASN54 4.8 44.0 1.0
O A:PHE21 4.9 29.1 1.0
CA A:ASP52 4.9 26.4 1.0
N A:ASP52 5.0 24.2 1.0

Chlorine binding site 2 out of 11 in 3pfc

Go back to Chlorine Binding Sites List in 3pfc
Chlorine binding site 2 out of 11 in the Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl255

b:31.6
occ:1.00
N A:LEU-4 3.3 22.1 1.0
CB A:ASN-5 3.4 21.3 1.0
CE1 A:HIS96 3.6 24.9 1.0
CG A:LEU-4 3.6 31.1 1.0
CB A:LEU-4 3.7 29.2 1.0
CG A:ASN-5 3.8 21.6 1.0
CD1 A:LEU-4 3.9 32.8 1.0
CD2 A:TYR-3 4.1 26.9 1.0
CA A:LEU-4 4.1 24.9 1.0
OD1 A:ASN-5 4.1 20.4 1.0
CG A:GLU23 4.2 41.8 1.0
CE2 A:TYR-3 4.2 29.3 1.0
C A:ASN-5 4.3 21.2 1.0
ND1 A:HIS96 4.3 23.1 1.0
CA A:ASN-5 4.3 20.5 1.0
CA A:GLU23 4.4 27.7 1.0
ND2 A:ASN-5 4.4 22.3 1.0
NE2 A:HIS96 4.7 25.1 1.0
CB A:GLU23 4.7 33.3 1.0
N A:TYR-3 4.8 24.8 1.0
O A:GLY22 5.0 24.3 1.0
C A:LEU-4 5.0 25.9 1.0

Chlorine binding site 3 out of 11 in 3pfc

Go back to Chlorine Binding Sites List in 3pfc
Chlorine binding site 3 out of 11 in the Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl256

b:66.5
occ:1.00
O A:HOH269 3.1 15.8 1.0
O A:HOH424 3.9 18.8 1.0
NZ A:LYS136 4.0 19.8 1.0
CD2 A:TYR179 4.3 21.6 1.0
NZ A:LYS207 4.4 46.9 1.0
O A:HOH434 4.6 39.9 1.0
CE A:LYS136 4.9 18.9 1.0
CB A:TYR179 4.9 15.8 1.0

Chlorine binding site 4 out of 11 in 3pfc

Go back to Chlorine Binding Sites List in 3pfc
Chlorine binding site 4 out of 11 in the Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl257

b:58.5
occ:1.00
CL A:CL258 3.3 73.6 1.0
O A:HOH450 3.5 45.5 1.0
CD A:ARG44 4.1 30.3 1.0
NH1 A:ARG44 4.7 29.9 1.0
NE A:ARG44 4.8 28.6 1.0

Chlorine binding site 5 out of 11 in 3pfc

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Chlorine binding site 5 out of 11 in the Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl258

b:73.6
occ:1.00
CL A:CL257 3.3 58.5 1.0
NH1 A:ARG44 3.4 29.9 1.0
ND2 A:ASN48 3.6 35.8 1.0
CD A:ARG44 3.9 30.3 1.0
CB A:ARG44 4.1 23.9 1.0
OE2 A:GLU45 4.3 53.8 1.0
CG A:ARG44 4.4 27.7 1.0
CZ A:ARG44 4.4 29.7 1.0
NE A:ARG44 4.6 28.6 1.0
CG A:ASN48 4.7 31.6 1.0
OD1 A:ASN48 4.9 32.8 1.0

Chlorine binding site 6 out of 11 in 3pfc

Go back to Chlorine Binding Sites List in 3pfc
Chlorine binding site 6 out of 11 in the Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl259

b:73.7
occ:1.00
O A:HOH445 3.1 38.0 1.0
CD1 A:LEU78 3.7 14.2 0.5
CD2 A:LEU78 4.1 13.1 0.5
CD A:PRO177 4.2 15.3 1.0
CG A:LEU78 4.5 14.7 0.5
O A:GLN175 4.8 16.8 1.0
CG A:PRO177 4.9 16.2 1.0

Chlorine binding site 7 out of 11 in 3pfc

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Chlorine binding site 7 out of 11 in the Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl260

b:41.3
occ:1.00
CD2 A:HIS105 2.9 16.4 1.0
N A:GLY33 3.2 17.0 1.0
CA A:HIS32 3.6 16.2 1.0
CB A:HIS32 3.7 16.9 1.0
CB A:ALA36 3.7 22.7 1.0
CG A:HIS105 3.7 17.4 1.0
C A:HIS32 3.9 16.8 1.0
CB A:HIS105 4.0 16.0 1.0
CD1 A:LEU43 4.0 20.9 1.0
NE2 A:HIS105 4.0 22.6 1.0
O A:HOH387 4.0 35.6 1.0
OG1 A:THR40 4.0 23.1 1.0
CA A:GLY33 4.1 16.2 1.0
CG2 A:THR40 4.2 21.2 1.0
CG A:LEU43 4.2 19.5 1.0
O A:HOH401 4.4 35.5 1.0
CD2 A:LEU43 4.5 19.4 1.0
O A:ASN37 4.7 21.6 1.0
CB A:THR40 4.7 23.1 1.0
O A:HIS105 4.9 16.3 1.0
N A:HIS32 4.9 14.8 1.0
CG A:HIS32 5.0 18.2 1.0
ND1 A:HIS105 5.0 18.9 1.0

Chlorine binding site 8 out of 11 in 3pfc

Go back to Chlorine Binding Sites List in 3pfc
Chlorine binding site 8 out of 11 in the Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl261

b:48.4
occ:1.00
O A:HOH474 3.1 48.5 1.0
O A:HOH473 3.1 41.8 1.0
N A:SER41 3.3 22.4 1.0
O A:HOH472 3.5 53.8 1.0
CB A:SER41 3.9 24.8 1.0
CA A:THR40 4.0 22.5 1.0
O A:HOH304 4.1 23.1 1.0
C A:THR40 4.1 22.9 1.0
CB A:THR40 4.2 23.1 1.0
CA A:SER41 4.3 24.2 1.0
CG2 A:THR40 4.8 21.2 1.0
O A:HOH436 4.9 47.7 1.0
NH2 A:ARG44 4.9 32.3 1.0

Chlorine binding site 9 out of 11 in 3pfc

Go back to Chlorine Binding Sites List in 3pfc
Chlorine binding site 9 out of 11 in the Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl262

b:51.9
occ:1.00
N A:THR5 3.3 27.9 1.0
O A:THR5 3.6 28.5 1.0
CA A:ILE4 3.6 31.8 1.0
OG1 A:THR5 3.8 34.2 1.0
CB A:ILE4 3.9 33.4 1.0
C A:ILE4 4.0 28.6 1.0
CG2 A:ILE4 4.3 46.3 1.0
CA A:THR5 4.3 27.4 1.0
C A:THR5 4.4 27.0 1.0
O A:THR3 4.5 34.5 1.0
CB A:THR5 4.7 32.0 1.0
N A:ILE4 4.9 30.4 1.0

Chlorine binding site 10 out of 11 in 3pfc

Go back to Chlorine Binding Sites List in 3pfc
Chlorine binding site 10 out of 11 in the Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of the Lactobacillus Johnsonii Cinnamoyl Esterase LJ0536 S106A Mutant in Complex with Ferulic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl263

b:56.9
occ:1.00
N A:GLU221 3.4 22.3 1.0
CB A:GLU221 3.9 29.6 1.0
CA A:GLU221 4.2 25.0 1.0
CA A:ILE220 4.2 23.0 1.0
C A:ILE220 4.2 23.4 1.0
CG2 A:ILE220 4.3 19.3 1.0
O A:LEU219 4.4 28.0 1.0
O A:GLU221 4.5 32.0 1.0
OD1 A:ASN234 4.7 25.7 1.0
CD1 A:ILE220 4.9 27.1 1.0
CB A:ILE220 4.9 21.9 1.0
C A:GLU221 4.9 28.1 1.0

Reference:

K.K.Lai, P.J.Stogios, C.Vu, X.Xu, H.Cui, S.Molloy, A.Savchenko, A.Yakunin, C.F.Gonzalez. An Inserted Alpha/Beta Subdomain Shapes the Catalytic Pocket of Lactobacillus Johnsonii Cinnamoyl Esterase Plos One V. 6 23269 2011.
ISSN: ESSN 1932-6203
PubMed: 21876742
DOI: 10.1371/JOURNAL.PONE.0023269
Page generated: Sat Dec 12 10:02:21 2020

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