Atomistry » Chlorine » PDB 3pet-3pmo » 3pig
Atomistry »
  Chlorine »
    PDB 3pet-3pmo »
      3pig »

Chlorine in PDB 3pig: Beta-Fructofuranosidase From Bifidobacterium Longum

Enzymatic activity of Beta-Fructofuranosidase From Bifidobacterium Longum

All present enzymatic activity of Beta-Fructofuranosidase From Bifidobacterium Longum:
3.2.1.26;

Protein crystallography data

The structure of Beta-Fructofuranosidase From Bifidobacterium Longum, PDB code: 3pig was solved by A.Bujacz, G.Bujacz, I.Redzynia, M.Krzepkowska-Jedrzejczak, S.Bielecki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 75.45 / 1.87
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 87.117, 87.117, 223.942, 90.00, 90.00, 120.00
R / Rfree (%) 14.9 / 19.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Beta-Fructofuranosidase From Bifidobacterium Longum (pdb code 3pig). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Beta-Fructofuranosidase From Bifidobacterium Longum, PDB code: 3pig:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 3pig

Go back to Chlorine Binding Sites List in 3pig
Chlorine binding site 1 out of 6 in the Beta-Fructofuranosidase From Bifidobacterium Longum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Beta-Fructofuranosidase From Bifidobacterium Longum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl527

b:27.6
occ:1.00
 N A:GLU387 3.2 21.9 1.0
N A:ALA388 3.3 17.0 1.0
O A:HOH1024 3.4 15.9 1.0
ND1 A:HIS511 3.5 25.0 1.0
O A:ALA388 3.7 18.7 1.0
CB A:GLU387 3.7 23.4 1.0
CA A:GLU387 3.8 21.6 1.0
O A:HOH1016 3.9 35.9 1.0
CG1 A:VAL389 3.9 15.8 1.0
C A:GLU387 4.1 20.2 1.0
CE1 A:HIS511 4.1 23.5 1.0
C A:ALA388 4.2 17.0 1.0
C A:ALA386 4.2 22.4 1.0
CA A:ALA386 4.2 22.7 1.0
CA A:ALA388 4.3 17.1 1.0
O A:ASP385 4.3 28.8 1.0
O A:HOH580 4.4 24.2 1.0
OE1 A:GLU387 4.6 34.7 1.0
CG A:HIS511 4.7 22.9 1.0
CG A:GLU387 4.7 26.8 1.0
CB A:ALA388 4.8 17.2 1.0

Chlorine binding site 2 out of 6 in 3pig

Go back to Chlorine Binding Sites List in 3pig
Chlorine binding site 2 out of 6 in the Beta-Fructofuranosidase From Bifidobacterium Longum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Beta-Fructofuranosidase From Bifidobacterium Longum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl528

b:31.0
occ:1.00
 O A:HOH1177 3.1 22.7 1.0
O A:HOH654 3.1 13.8 1.0
NH1 A:ARG428 3.2 16.0 1.0
NH2 A:ARG428 3.2 17.5 1.0
O A:HOH797 3.3 17.5 1.0
CZ A:ARG428 3.7 19.1 1.0
CB A:MET266 3.9 19.9 1.0
CE A:MET266 3.9 20.8 1.0
N A:MET266 4.0 18.3 1.0
CB A:PHE265 4.1 17.1 1.0
C A:PHE265 4.1 16.6 1.0
CA A:MET266 4.2 18.2 1.0
O A:HOH628 4.2 14.5 1.0
O A:PHE265 4.5 18.1 1.0
CA A:PHE265 4.6 17.7 1.0
O A:HOH919 4.7 14.1 1.0
N A:PHE265 4.8 17.3 1.0
CG A:MET266 4.8 21.1 1.0
SD A:MET266 4.9 26.0 1.0
NE A:ARG428 5.0 17.6 1.0

Chlorine binding site 3 out of 6 in 3pig

Go back to Chlorine Binding Sites List in 3pig
Chlorine binding site 3 out of 6 in the Beta-Fructofuranosidase From Bifidobacterium Longum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Beta-Fructofuranosidase From Bifidobacterium Longum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl529

b:36.3
occ:1.00
 O A:HOH863 2.6 19.9 1.0
O A:HOH1069 2.7 13.6 1.0
O A:ALA486 2.9 17.6 1.0
C A:SER487 3.4 18.6 1.0
O A:SER487 3.4 18.7 1.0
N A:GLU488 3.7 19.4 1.0
NE1 A:TRP39 3.8 17.6 1.0
C A:ALA486 3.9 16.9 1.0
CA A:GLU488 3.9 19.3 1.0
CA A:SER487 4.0 18.0 1.0
CD A:ARG38 4.1 19.2 1.0
NH2 A:ARG491 4.1 15.8 1.0
CG A:GLU488 4.2 24.8 1.0
CB A:ARG38 4.2 17.9 1.0
CE2 A:TRP39 4.3 16.0 1.0
CZ2 A:TRP39 4.3 19.9 1.0
O A:HOH601 4.3 13.1 1.0
N A:SER487 4.4 16.1 1.0
CD A:GLU488 4.4 32.1 1.0
OE2 A:GLU488 4.5 36.8 1.0
CG A:ARG38 4.5 16.9 1.0
CB A:GLU488 4.7 20.9 1.0
O A:HOH806 4.7 34.8 1.0
CD1 A:TRP39 4.7 17.9 1.0
O A:HOH721 4.9 16.8 1.0
OE1 A:GLU488 5.0 28.1 1.0

Chlorine binding site 4 out of 6 in 3pig

Go back to Chlorine Binding Sites List in 3pig
Chlorine binding site 4 out of 6 in the Beta-Fructofuranosidase From Bifidobacterium Longum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Beta-Fructofuranosidase From Bifidobacterium Longum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl527

b:31.9
occ:1.00
 O B:HOH873 3.0 24.2 1.0
NH2 B:ARG428 3.1 17.9 1.0
O B:HOH677 3.1 15.9 1.0
O B:HOH653 3.2 13.0 1.0
NH1 B:ARG428 3.2 17.6 1.0
O B:HOH991 3.5 36.6 1.0
CZ B:ARG428 3.6 21.1 1.0
CB B:MET266 3.9 21.4 1.0
CB B:PHE265 4.0 17.9 1.0
N B:MET266 4.1 19.4 1.0
C B:PHE265 4.2 18.6 1.0
CE B:MET266 4.2 25.9 1.0
CA B:MET266 4.3 20.3 1.0
O B:HOH557 4.4 11.4 1.0
O B:PHE265 4.5 19.2 1.0
CA B:PHE265 4.5 18.1 1.0
O B:HOH713 4.5 15.2 1.0
N B:PHE265 4.8 18.4 1.0
CG B:MET266 4.9 24.5 1.0
NE B:ARG428 4.9 20.2 1.0
SD B:MET266 5.0 27.4 1.0

Chlorine binding site 5 out of 6 in 3pig

Go back to Chlorine Binding Sites List in 3pig
Chlorine binding site 5 out of 6 in the Beta-Fructofuranosidase From Bifidobacterium Longum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Beta-Fructofuranosidase From Bifidobacterium Longum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl528

b:28.0
occ:1.00
 N B:GLU387 3.2 18.7 1.0
N B:ALA388 3.3 19.3 1.0
O B:HOH913 3.5 34.4 1.0
O B:HOH778 3.6 15.5 1.0
CB B:GLU387 3.6 22.6 1.0
CD2 B:HIS511 3.7 20.2 1.0
O B:ALA388 3.7 20.0 1.0
CA B:GLU387 3.8 21.2 1.0
CG1 B:VAL389 3.9 16.8 1.0
C B:GLU387 4.1 20.2 1.0
C B:ALA386 4.2 20.5 1.0
O B:HOH652 4.2 16.4 1.0
CA B:ALA386 4.2 20.4 1.0
C B:ALA388 4.2 19.0 1.0
CA B:ALA388 4.3 19.2 1.0
O B:ASP385 4.3 22.9 1.0
NE2 B:HIS511 4.5 19.3 1.0
O B:HOH802 4.6 23.4 1.0
CG B:HIS511 4.7 21.6 1.0
CB B:ALA388 4.9 17.7 1.0
CG B:GLU387 4.9 29.9 1.0

Chlorine binding site 6 out of 6 in 3pig

Go back to Chlorine Binding Sites List in 3pig
Chlorine binding site 6 out of 6 in the Beta-Fructofuranosidase From Bifidobacterium Longum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Beta-Fructofuranosidase From Bifidobacterium Longum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl529

b:29.7
occ:1.00
 O B:HOH652 3.0 16.4 1.0
OD1 B:ASP384 3.1 21.8 0.5
N B:ASP384 3.2 21.0 1.0
N B:ASP385 3.3 21.9 1.0
CB B:ALA383 3.6 20.6 1.0
CA B:ALA383 3.8 20.4 1.0
C B:ALA383 3.9 20.8 1.0
O B:ASP385 3.9 22.9 1.0
C B:ASP385 4.0 22.2 1.0
CA B:ASP384 4.0 22.7 0.5
CA B:ASP384 4.1 22.4 0.5
CA B:ASP385 4.1 22.3 1.0
C B:ASP384 4.1 22.6 1.0
CG B:ASP384 4.2 23.8 0.5
CB B:ASP384 4.4 23.5 0.5
O B:HOH1068 4.5 31.0 1.0
N B:ALA386 4.6 21.4 1.0
CB B:ASP384 4.6 23.2 0.5
CB B:ASP385 4.6 24.6 1.0

Reference:

A.Bujacz, M.Jedrzejczak-Krzepkowska, S.Bielecki, I.Redzynia, G.Bujacz. Crystal Structures of the Apo Form of Beta-Fructofuranosidase From Bifidobacterium Longum and Its Complex with Fructose Febs J. V. 278 1728 2011.
ISSN: ISSN 1742-464X
PubMed: 21418142
DOI: 10.1111/J.1742-4658.2011.08098.X
Page generated: Sat Dec 12 10:02:31 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy