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Chlorine in PDB 3pij: Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose

Enzymatic activity of Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose

All present enzymatic activity of Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose:
3.2.1.26;

Protein crystallography data

The structure of Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose, PDB code: 3pij was solved by A.Bujacz, G.Bujacz, I.Redzynia, M.Krzepkowska-Jedrzejczak, S.Bielecki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.40 / 1.80
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 86.765, 86.765, 223.868, 90.00, 90.00, 120.00
R / Rfree (%) 15.3 / 20.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose (pdb code 3pij). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose, PDB code: 3pij:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 3pij

Go back to Chlorine Binding Sites List in 3pij
Chlorine binding site 1 out of 5 in the Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl528

b:30.0
occ:1.00
 N A:GLU387 3.1 22.8 1.0
O A:HOH1006 3.2 17.8 1.0
N A:ALA388 3.3 18.4 1.0
O A:ALA388 3.6 19.9 1.0
CB A:GLU387 3.6 23.8 1.0
ND1 A:HIS511 3.7 27.5 1.0
CA A:GLU387 3.8 22.9 1.0
CG1 A:VAL389 4.0 17.5 1.0
C A:GLU387 4.0 21.2 1.0
C A:ALA386 4.1 25.1 1.0
C A:ALA388 4.1 17.7 1.0
CA A:ALA386 4.2 25.2 1.0
CA A:ALA388 4.2 18.5 1.0
O A:ASP385 4.4 30.0 1.0
CE1 A:HIS523 4.4 60.9 1.0
CE1 A:HIS511 4.4 26.3 1.0
O A:HOH581 4.4 28.9 1.0
OE2 A:GLU387 4.6 38.2 1.0
CG A:HIS511 4.7 24.9 1.0
CB A:ALA388 4.7 19.2 1.0
CG A:GLU387 4.8 29.8 1.0
ND1 A:HIS523 4.8 61.1 1.0
CB A:HIS511 5.0 23.3 1.0

Chlorine binding site 2 out of 5 in 3pij

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Chlorine binding site 2 out of 5 in the Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl529

b:38.2
occ:1.00
 O A:HOH1066 2.8 27.1 1.0
O A:HOH674 3.0 16.0 1.0
NH1 A:ARG428 3.1 17.1 1.0
NH2 A:ARG428 3.2 23.4 1.0
O A:HOH829 3.4 15.2 1.0
CZ A:ARG428 3.6 21.3 1.0
CE A:MET266 3.8 29.3 1.0
CB A:MET266 4.0 20.7 1.0
N A:MET266 4.1 19.6 1.0
O A:HOH641 4.3 15.6 1.0
CB A:PHE265 4.3 17.8 1.0
C A:PHE265 4.3 18.1 1.0
CA A:MET266 4.4 20.0 1.0
O A:HOH930 4.6 17.9 1.0
O A:PHE265 4.6 19.6 1.0
CA A:PHE265 4.8 18.6 1.0
CG A:PRO447 4.8 18.8 1.0
CB A:PRO447 4.9 19.9 1.0
NE A:ARG428 4.9 20.5 1.0
N A:PHE265 4.9 18.2 1.0
SD A:MET266 5.0 29.1 1.0
CG A:MET266 5.0 23.7 1.0

Chlorine binding site 3 out of 5 in 3pij

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Chlorine binding site 3 out of 5 in the Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl528

b:37.7
occ:1.00
 O B:HOH668 3.1 18.1 1.0
O B:HOH863 3.1 25.8 1.0
NH2 B:ARG428 3.1 22.4 1.0
NH1 B:ARG428 3.2 18.6 1.0
O B:HOH642 3.3 16.5 1.0
CZ B:ARG428 3.6 22.7 1.0
CB B:MET266 4.0 22.6 1.0
CB B:PHE265 4.1 14.8 1.0
CE B:MET266 4.2 29.1 1.0
N B:MET266 4.2 18.9 1.0
C B:PHE265 4.2 18.4 1.0
O B:HOH565 4.3 15.1 1.0
CA B:MET266 4.3 20.4 1.0
O B:HOH704 4.4 20.2 1.0
O B:PHE265 4.6 19.9 1.0
CA B:PHE265 4.6 18.0 1.0
N B:PHE265 4.8 17.7 1.0
CG B:MET266 4.9 24.7 1.0
CG B:PRO447 4.9 21.1 1.0
NE B:ARG428 5.0 21.5 1.0

Chlorine binding site 4 out of 5 in 3pij

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Chlorine binding site 4 out of 5 in the Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl529

b:32.6
occ:1.00
 N B:GLU387 3.2 20.8 1.0
N B:ALA388 3.3 19.3 1.0
O B:HOH771 3.4 22.9 1.0
CB B:GLU387 3.6 23.5 1.0
CD2 B:HIS511 3.6 24.3 1.0
O B:ALA388 3.8 18.4 1.0
CA B:GLU387 3.8 22.4 1.0
CG1 B:VAL389 4.0 19.2 1.0
C B:GLU387 4.1 21.2 1.0
O B:HOH640 4.1 17.3 1.0
C B:ALA386 4.1 22.6 1.0
CA B:ALA386 4.2 22.2 1.0
C B:ALA388 4.3 19.1 1.0
CA B:ALA388 4.3 18.9 1.0
NE2 B:HIS511 4.4 21.4 1.0
OE2 B:GLU387 4.5 40.8 1.0
O B:ASP385 4.5 23.7 1.0
O B:HOH792 4.5 27.6 1.0
CG B:HIS511 4.6 20.3 1.0
CG B:GLU387 4.8 31.8 1.0
CB B:ALA388 4.8 17.4 1.0
CB B:ALA386 5.0 21.4 1.0

Chlorine binding site 5 out of 5 in 3pij

Go back to Chlorine Binding Sites List in 3pij
Chlorine binding site 5 out of 5 in the Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl530

b:24.1
occ:1.00
 O B:HOH640 3.0 17.3 1.0
N B:ASP384 3.1 21.9 1.0
OD1 B:ASP384 3.1 27.4 0.5
N B:ASP385 3.2 23.9 1.0
CB B:ALA383 3.7 21.2 1.0
CA B:ALA383 3.8 20.9 1.0
C B:ALA383 3.9 21.8 1.0
O B:ASP385 3.9 23.7 1.0
C B:ASP385 4.0 24.1 1.0
CA B:ASP384 4.0 23.6 0.5
CA B:ASP384 4.0 23.8 0.5
C B:ASP384 4.1 24.1 1.0
CA B:ASP385 4.1 24.4 1.0
CG B:ASP384 4.2 27.4 0.5
CB B:ASP384 4.3 24.4 0.5
O B:HOH989 4.5 28.8 1.0
CB B:ASP384 4.6 25.2 0.5
N B:ALA386 4.6 22.8 1.0
CB B:ASP385 4.7 26.2 1.0

Reference:

A.Bujacz, M.Jedrzejczak-Krzepkowska, S.Bielecki, I.Redzynia, G.Bujacz. Crystal Structures of the Apo Form of Beta-Fructofuranosidase From Bifidobacterium Longum and Its Complex with Fructose Febs J. V. 278 1728 2011.
ISSN: ISSN 1742-464X
PubMed: 21418142
DOI: 10.1111/J.1742-4658.2011.08098.X
Page generated: Sat Dec 12 10:02:31 2020

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