Atomistry » Chlorine » PDB 3pet-3pmo » 3pij
Atomistry »
  Chlorine »
    PDB 3pet-3pmo »
      3pij »

Chlorine in PDB 3pij: Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose

Enzymatic activity of Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose

All present enzymatic activity of Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose:
3.2.1.26;

Protein crystallography data

The structure of Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose, PDB code: 3pij was solved by A.Bujacz, G.Bujacz, I.Redzynia, M.Krzepkowska-Jedrzejczak, S.Bielecki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.40 / 1.80
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 86.765, 86.765, 223.868, 90.00, 90.00, 120.00
R / Rfree (%) 15.3 / 20.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose (pdb code 3pij). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose, PDB code: 3pij:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 3pij

Go back to Chlorine Binding Sites List in 3pij
Chlorine binding site 1 out of 5 in the Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl528

b:30.0
occ:1.00
 N A:GLU387 3.1 22.8 1.0
O A:HOH1006 3.2 17.8 1.0
N A:ALA388 3.3 18.4 1.0
O A:ALA388 3.6 19.9 1.0
CB A:GLU387 3.6 23.8 1.0
ND1 A:HIS511 3.7 27.5 1.0
CA A:GLU387 3.8 22.9 1.0
CG1 A:VAL389 4.0 17.5 1.0
C A:GLU387 4.0 21.2 1.0
C A:ALA386 4.1 25.1 1.0
C A:ALA388 4.1 17.7 1.0
CA A:ALA386 4.2 25.2 1.0
CA A:ALA388 4.2 18.5 1.0
O A:ASP385 4.4 30.0 1.0
CE1 A:HIS523 4.4 60.9 1.0
CE1 A:HIS511 4.4 26.3 1.0
O A:HOH581 4.4 28.9 1.0
OE2 A:GLU387 4.6 38.2 1.0
CG A:HIS511 4.7 24.9 1.0
CB A:ALA388 4.7 19.2 1.0
CG A:GLU387 4.8 29.8 1.0
ND1 A:HIS523 4.8 61.1 1.0
CB A:HIS511 5.0 23.3 1.0

Chlorine binding site 2 out of 5 in 3pij

Go back to Chlorine Binding Sites List in 3pij
Chlorine binding site 2 out of 5 in the Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl529

b:38.2
occ:1.00
 O A:HOH1066 2.8 27.1 1.0
O A:HOH674 3.0 16.0 1.0
NH1 A:ARG428 3.1 17.1 1.0
NH2 A:ARG428 3.2 23.4 1.0
O A:HOH829 3.4 15.2 1.0
CZ A:ARG428 3.6 21.3 1.0
CE A:MET266 3.8 29.3 1.0
CB A:MET266 4.0 20.7 1.0
N A:MET266 4.1 19.6 1.0
O A:HOH641 4.3 15.6 1.0
CB A:PHE265 4.3 17.8 1.0
C A:PHE265 4.3 18.1 1.0
CA A:MET266 4.4 20.0 1.0
O A:HOH930 4.6 17.9 1.0
O A:PHE265 4.6 19.6 1.0
CA A:PHE265 4.8 18.6 1.0
CG A:PRO447 4.8 18.8 1.0
CB A:PRO447 4.9 19.9 1.0
NE A:ARG428 4.9 20.5 1.0
N A:PHE265 4.9 18.2 1.0
SD A:MET266 5.0 29.1 1.0
CG A:MET266 5.0 23.7 1.0

Chlorine binding site 3 out of 5 in 3pij

Go back to Chlorine Binding Sites List in 3pij
Chlorine binding site 3 out of 5 in the Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl528

b:37.7
occ:1.00
 O B:HOH668 3.1 18.1 1.0
O B:HOH863 3.1 25.8 1.0
NH2 B:ARG428 3.1 22.4 1.0
NH1 B:ARG428 3.2 18.6 1.0
O B:HOH642 3.3 16.5 1.0
CZ B:ARG428 3.6 22.7 1.0
CB B:MET266 4.0 22.6 1.0
CB B:PHE265 4.1 14.8 1.0
CE B:MET266 4.2 29.1 1.0
N B:MET266 4.2 18.9 1.0
C B:PHE265 4.2 18.4 1.0
O B:HOH565 4.3 15.1 1.0
CA B:MET266 4.3 20.4 1.0
O B:HOH704 4.4 20.2 1.0
O B:PHE265 4.6 19.9 1.0
CA B:PHE265 4.6 18.0 1.0
N B:PHE265 4.8 17.7 1.0
CG B:MET266 4.9 24.7 1.0
CG B:PRO447 4.9 21.1 1.0
NE B:ARG428 5.0 21.5 1.0

Chlorine binding site 4 out of 5 in 3pij

Go back to Chlorine Binding Sites List in 3pij
Chlorine binding site 4 out of 5 in the Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl529

b:32.6
occ:1.00
 N B:GLU387 3.2 20.8 1.0
N B:ALA388 3.3 19.3 1.0
O B:HOH771 3.4 22.9 1.0
CB B:GLU387 3.6 23.5 1.0
CD2 B:HIS511 3.6 24.3 1.0
O B:ALA388 3.8 18.4 1.0
CA B:GLU387 3.8 22.4 1.0
CG1 B:VAL389 4.0 19.2 1.0
C B:GLU387 4.1 21.2 1.0
O B:HOH640 4.1 17.3 1.0
C B:ALA386 4.1 22.6 1.0
CA B:ALA386 4.2 22.2 1.0
C B:ALA388 4.3 19.1 1.0
CA B:ALA388 4.3 18.9 1.0
NE2 B:HIS511 4.4 21.4 1.0
OE2 B:GLU387 4.5 40.8 1.0
O B:ASP385 4.5 23.7 1.0
O B:HOH792 4.5 27.6 1.0
CG B:HIS511 4.6 20.3 1.0
CG B:GLU387 4.8 31.8 1.0
CB B:ALA388 4.8 17.4 1.0
CB B:ALA386 5.0 21.4 1.0

Chlorine binding site 5 out of 5 in 3pij

Go back to Chlorine Binding Sites List in 3pij
Chlorine binding site 5 out of 5 in the Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Beta-Fructofuranosidase From Bifidobacterium Longum - Complex with Fructose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl530

b:24.1
occ:1.00
 O B:HOH640 3.0 17.3 1.0
N B:ASP384 3.1 21.9 1.0
OD1 B:ASP384 3.1 27.4 0.5
N B:ASP385 3.2 23.9 1.0
CB B:ALA383 3.7 21.2 1.0
CA B:ALA383 3.8 20.9 1.0
C B:ALA383 3.9 21.8 1.0
O B:ASP385 3.9 23.7 1.0
C B:ASP385 4.0 24.1 1.0
CA B:ASP384 4.0 23.6 0.5
CA B:ASP384 4.0 23.8 0.5
C B:ASP384 4.1 24.1 1.0
CA B:ASP385 4.1 24.4 1.0
CG B:ASP384 4.2 27.4 0.5
CB B:ASP384 4.3 24.4 0.5
O B:HOH989 4.5 28.8 1.0
CB B:ASP384 4.6 25.2 0.5
N B:ALA386 4.6 22.8 1.0
CB B:ASP385 4.7 26.2 1.0

Reference:

A.Bujacz, M.Jedrzejczak-Krzepkowska, S.Bielecki, I.Redzynia, G.Bujacz. Crystal Structures of the Apo Form of Beta-Fructofuranosidase From Bifidobacterium Longum and Its Complex with Fructose Febs J. V. 278 1728 2011.
ISSN: ISSN 1742-464X
PubMed: 21418142
DOI: 10.1111/J.1742-4658.2011.08098.X
Page generated: Sun Jul 21 02:24:24 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy