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Chlorine in PDB 3ps9: Crystal Structure of Mnmc From E. Coli

Enzymatic activity of Crystal Structure of Mnmc From E. Coli

All present enzymatic activity of Crystal Structure of Mnmc From E. Coli:
2.1.1.61;

Protein crystallography data

The structure of Crystal Structure of Mnmc From E. Coli, PDB code: 3ps9 was solved by J.Kim, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.54
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 100.063, 100.063, 159.190, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 24.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Mnmc From E. Coli (pdb code 3ps9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Mnmc From E. Coli, PDB code: 3ps9:

Chlorine binding site 1 out of 1 in 3ps9

Go back to Chlorine Binding Sites List in 3ps9
Chlorine binding site 1 out of 1 in the Crystal Structure of Mnmc From E. Coli


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Mnmc From E. Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl671

b:31.9
occ:1.00
O A:HOH796 3.2 11.8 1.0
OD1 A:ASN306 3.2 18.3 1.0
C4X A:FAD669 3.3 25.2 1.0
C10 A:FAD669 3.3 25.9 1.0
CA A:GLY309 3.4 16.2 1.0
CB A:ASN306 3.5 20.0 1.0
N5 A:FAD669 3.5 26.2 1.0
O A:HOH778 3.5 8.3 1.0
CG A:PRO408 3.6 15.5 1.0
N10 A:FAD669 3.7 24.4 1.0
C4 A:FAD669 3.8 26.4 1.0
CG A:ASN306 3.8 19.8 1.0
C5X A:FAD669 3.9 24.5 1.0
N1 A:FAD669 3.9 28.0 1.0
C9A A:FAD669 3.9 23.2 1.0
N A:GLY309 4.0 16.8 1.0
CD1 A:LEU620 4.2 8.7 1.0
N3 A:FAD669 4.3 30.5 1.0
C2 A:FAD669 4.4 31.6 1.0
O4 A:FAD669 4.4 27.7 1.0
C1' A:FAD669 4.4 24.1 1.0
O A:GLN308 4.4 18.8 1.0
CB A:PRO408 4.4 14.7 1.0
C A:GLN308 4.5 17.7 1.0
C A:GLY309 4.7 17.0 1.0
CD A:PRO408 4.7 16.2 1.0
C6 A:FAD669 4.8 23.3 1.0
CA A:ASN306 4.8 19.8 1.0
C9 A:FAD669 4.8 21.7 1.0
CG A:LEU620 4.8 13.2 1.0
N A:ASN306 4.9 18.4 1.0
OH A:TYR504 5.0 21.0 1.0

Reference:

J.Kim, S.C.Almo. Structural Basis For Hypermodification of the Wobble Uridine in Trna By Bifunctional Enzyme Mnmc. Bmc Struct.Biol. V. 13 5 2013.
ISSN: ESSN 1472-6807
PubMed: 23617613
DOI: 10.1186/1472-6807-13-5
Page generated: Sun Jul 21 02:34:34 2024

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