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Chlorine in PDB 3pug: Haloferax Volcanii Malate Synthase Native at 3MM Glyoxylate

Enzymatic activity of Haloferax Volcanii Malate Synthase Native at 3MM Glyoxylate

All present enzymatic activity of Haloferax Volcanii Malate Synthase Native at 3MM Glyoxylate:
2.3.3.9;

Protein crystallography data

The structure of Haloferax Volcanii Malate Synthase Native at 3MM Glyoxylate, PDB code: 3pug was solved by B.R.Howard, C.D.Bracken, A.M.Neighbor, G.C.Thomas, K.K.Lamlenn, H.L.Schubert, F.G.Whitby, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.70
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 156.370, 156.370, 141.455, 90.00, 90.00, 120.00
R / Rfree (%) 19.8 / 26.3

Other elements in 3pug:

The structure of Haloferax Volcanii Malate Synthase Native at 3MM Glyoxylate also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Potassium (K) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Haloferax Volcanii Malate Synthase Native at 3MM Glyoxylate (pdb code 3pug). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Haloferax Volcanii Malate Synthase Native at 3MM Glyoxylate, PDB code: 3pug:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3pug

Go back to Chlorine Binding Sites List in 3pug
Chlorine binding site 1 out of 4 in the Haloferax Volcanii Malate Synthase Native at 3MM Glyoxylate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Haloferax Volcanii Malate Synthase Native at 3MM Glyoxylate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl701

b:45.7
occ:1.00
K A:K802 3.1 48.2 1.0
N A:ALA227 3.2 38.4 1.0
O A:HOH439 3.3 35.7 1.0
O A:GLY252 3.7 43.8 1.0
CA A:VAL226 3.8 37.5 1.0
NH2 A:ARG4 3.8 90.6 1.0
C A:VAL226 3.9 37.7 1.0
CB A:ALA227 4.0 36.7 1.0
O A:CYS225 4.0 39.6 1.0
CA A:ALA227 4.1 39.2 1.0
CB A:ALA220 4.1 38.0 1.0
CG1 A:VAL226 4.4 34.6 1.0
O A:ALA227 4.6 43.0 1.0
CZ A:ARG4 4.6 90.0 1.0
CB A:VAL226 4.6 37.3 1.0
NE A:ARG4 4.7 89.0 1.0
N A:VAL226 4.8 38.2 1.0
C A:CYS225 4.8 38.7 1.0
OG A:SER221 4.9 48.1 1.0
C A:ALA227 4.9 40.4 1.0
C A:GLY252 5.0 42.8 1.0

Chlorine binding site 2 out of 4 in 3pug

Go back to Chlorine Binding Sites List in 3pug
Chlorine binding site 2 out of 4 in the Haloferax Volcanii Malate Synthase Native at 3MM Glyoxylate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Haloferax Volcanii Malate Synthase Native at 3MM Glyoxylate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl702

b:49.3
occ:1.00
NH2 A:ARG95 3.2 32.1 1.0
NH1 A:ARG95 3.2 35.7 1.0
O A:ARG89 3.4 35.6 1.0
CD A:PRO92 3.5 37.6 1.0
CZ A:ARG95 3.6 36.9 1.0
C A:ASP90 3.7 40.5 1.0
N A:SER91 3.8 41.5 1.0
CA A:ASP90 3.9 40.0 1.0
O A:ASP90 4.1 42.1 1.0
CG A:PRO92 4.1 36.5 1.0
O A:HOH448 4.3 41.9 1.0
C A:ARG89 4.4 35.5 1.0
N A:PRO92 4.4 38.8 1.0
N A:ASP90 4.6 37.5 1.0
CA A:SER91 4.7 39.6 1.0
C A:SER91 4.8 40.0 1.0
NE A:ARG95 5.0 33.6 1.0

Chlorine binding site 3 out of 4 in 3pug

Go back to Chlorine Binding Sites List in 3pug
Chlorine binding site 3 out of 4 in the Haloferax Volcanii Malate Synthase Native at 3MM Glyoxylate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Haloferax Volcanii Malate Synthase Native at 3MM Glyoxylate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl703

b:73.9
occ:1.00
N A:ALA208 3.5 44.8 1.0
CA A:PRO207 3.7 47.1 1.0
O A:HOH482 3.8 61.1 1.0
CB A:PRO207 4.0 46.7 1.0
C A:PRO207 4.1 46.4 1.0
CB A:ALA208 4.2 40.1 1.0
CA A:ALA208 4.5 42.3 1.0

Chlorine binding site 4 out of 4 in 3pug

Go back to Chlorine Binding Sites List in 3pug
Chlorine binding site 4 out of 4 in the Haloferax Volcanii Malate Synthase Native at 3MM Glyoxylate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Haloferax Volcanii Malate Synthase Native at 3MM Glyoxylate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl704

b:81.4
occ:0.33
NH1 A:ARG218 3.6 42.9 1.0
NH2 A:ARG218 3.6 38.3 1.0
O A:HOH466 3.8 55.2 1.0
CZ A:ARG218 4.1 44.3 1.0
ND2 A:ASN215 4.2 40.2 1.0
OD1 A:ASN215 4.3 36.1 1.0
CG A:ASN215 4.5 36.3 1.0

Reference:

C.D.Bracken, A.M.Neighbor, K.K.Lamlenn, G.C.Thomas, H.L.Schubert, F.G.Whitby, B.R.Howard. Crystal Structures of A Halophilic Archaeal Malate Synthase From Haloferax Volcanii and Comparisons with Isoforms A and G. Bmc Struct.Biol. V. 11 23 2011.
ISSN: ESSN 1472-6807
PubMed: 21569248
DOI: 10.1186/1472-6807-11-23
Page generated: Fri Jul 11 09:13:10 2025

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