Chlorine in PDB 3q2g: ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors
Protein crystallography data
The structure of ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors, PDB code: 3q2g
was solved by
S.Gerhardt,
D.Hargreaves,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
114.71 /
2.30
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
51.309,
63.419,
114.912,
90.00,
89.88,
90.00
|
R / Rfree (%)
|
20.8 /
26.1
|
Other elements in 3q2g:
The structure of ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors
(pdb code 3q2g). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors, PDB code: 3q2g:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 3q2g
Go back to
Chlorine Binding Sites List in 3q2g
Chlorine binding site 1 out
of 4 in the ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1
b:66.9
occ:1.00
|
CL1
|
A:QGF1
|
0.0
|
66.9
|
1.0
|
C21
|
A:QGF1
|
1.7
|
66.2
|
1.0
|
C23
|
A:QGF1
|
2.7
|
65.6
|
1.0
|
C20
|
A:QGF1
|
2.7
|
65.9
|
1.0
|
CZ
|
A:PHE274
|
3.1
|
42.4
|
1.0
|
CE1
|
A:PHE274
|
3.7
|
43.9
|
1.0
|
CE2
|
A:PHE274
|
4.0
|
41.4
|
1.0
|
C24
|
A:QGF1
|
4.0
|
65.2
|
1.0
|
C19
|
A:QGF1
|
4.0
|
64.9
|
1.0
|
CG
|
A:PHE145
|
4.0
|
27.0
|
1.0
|
CD2
|
A:PHE145
|
4.1
|
28.6
|
1.0
|
CB
|
A:PHE145
|
4.3
|
26.1
|
1.0
|
CD1
|
A:LEU185
|
4.4
|
49.4
|
1.0
|
CB
|
A:LEU185
|
4.5
|
51.7
|
1.0
|
CG
|
A:LEU185
|
4.5
|
51.0
|
1.0
|
C18
|
A:QGF1
|
4.5
|
63.7
|
1.0
|
CD1
|
A:PHE145
|
4.5
|
27.0
|
1.0
|
CE2
|
A:PHE145
|
4.6
|
29.1
|
1.0
|
O
|
A:SER183
|
4.7
|
56.6
|
1.0
|
CD1
|
A:PHE274
|
4.9
|
42.4
|
1.0
|
CE1
|
A:PHE145
|
5.0
|
27.6
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 3q2g
Go back to
Chlorine Binding Sites List in 3q2g
Chlorine binding site 2 out
of 4 in the ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1
b:68.9
occ:1.00
|
CL2
|
A:QGF1
|
0.0
|
68.9
|
1.0
|
C24
|
A:QGF1
|
1.7
|
65.2
|
1.0
|
C23
|
A:QGF1
|
2.7
|
65.6
|
1.0
|
C18
|
A:QGF1
|
2.7
|
63.7
|
1.0
|
C17
|
A:QGF1
|
3.1
|
59.8
|
1.0
|
OG1
|
A:THR146
|
3.2
|
24.9
|
1.0
|
CD2
|
A:LEU182
|
3.5
|
51.1
|
1.0
|
CD1
|
A:LEU118
|
3.6
|
38.3
|
1.0
|
O16
|
A:QGF1
|
3.7
|
51.6
|
1.0
|
N
|
A:THR146
|
3.8
|
24.4
|
1.0
|
C21
|
A:QGF1
|
4.0
|
66.2
|
1.0
|
O
|
A:GLN142
|
4.0
|
28.2
|
1.0
|
C19
|
A:QGF1
|
4.0
|
64.9
|
1.0
|
CA
|
A:THR146
|
4.1
|
24.4
|
1.0
|
CB
|
A:THR146
|
4.2
|
24.0
|
1.0
|
C14
|
A:QGF1
|
4.3
|
44.7
|
1.0
|
C
|
A:PHE145
|
4.5
|
25.2
|
1.0
|
C20
|
A:QGF1
|
4.5
|
65.9
|
1.0
|
CB
|
A:PHE145
|
4.5
|
26.1
|
1.0
|
C13
|
A:QGF1
|
4.6
|
46.7
|
1.0
|
CG
|
A:LEU182
|
4.7
|
52.1
|
1.0
|
CE1
|
A:PHE274
|
4.8
|
43.9
|
1.0
|
CD1
|
A:LEU182
|
4.8
|
51.3
|
1.0
|
CG2
|
A:THR146
|
4.9
|
23.2
|
1.0
|
CG
|
A:LEU118
|
4.9
|
38.1
|
1.0
|
C
|
A:GLN142
|
4.9
|
28.0
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 3q2g
Go back to
Chlorine Binding Sites List in 3q2g
Chlorine binding site 3 out
of 4 in the ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl2
b:69.2
occ:1.00
|
CL1
|
B:QGF2
|
0.0
|
69.2
|
1.0
|
C21
|
B:QGF2
|
1.7
|
67.4
|
1.0
|
C23
|
B:QGF2
|
2.7
|
67.0
|
1.0
|
C20
|
B:QGF2
|
2.8
|
67.2
|
1.0
|
C24
|
B:QGF2
|
4.0
|
66.9
|
1.0
|
CD2
|
B:PHE145
|
4.0
|
33.7
|
1.0
|
C19
|
B:QGF2
|
4.0
|
66.0
|
1.0
|
CG
|
B:PHE145
|
4.1
|
31.4
|
1.0
|
CB
|
B:LEU185
|
4.2
|
51.6
|
1.0
|
CB
|
B:PHE145
|
4.4
|
29.8
|
1.0
|
CG
|
B:LEU185
|
4.5
|
51.4
|
1.0
|
CD1
|
B:LEU185
|
4.5
|
51.0
|
1.0
|
CE2
|
B:PHE145
|
4.5
|
33.4
|
1.0
|
O
|
B:SER183
|
4.5
|
55.7
|
1.0
|
C18
|
B:QGF2
|
4.5
|
65.7
|
1.0
|
CD2
|
B:LEU182
|
4.6
|
54.3
|
1.0
|
CD1
|
B:PHE145
|
4.7
|
34.0
|
1.0
|
CZ
|
B:PHE145
|
5.0
|
33.7
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 3q2g
Go back to
Chlorine Binding Sites List in 3q2g
Chlorine binding site 4 out
of 4 in the ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of ADAMTS1 in Complex with A Novel N-Hydroxyformamide Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl2
b:69.0
occ:1.00
|
CL2
|
B:QGF2
|
0.0
|
69.0
|
1.0
|
C24
|
B:QGF2
|
1.7
|
66.9
|
1.0
|
C23
|
B:QGF2
|
2.6
|
67.0
|
1.0
|
C18
|
B:QGF2
|
2.8
|
65.7
|
1.0
|
OG1
|
B:THR146
|
2.9
|
30.0
|
1.0
|
C17
|
B:QGF2
|
3.2
|
64.1
|
1.0
|
CD1
|
B:LEU118
|
3.6
|
42.5
|
1.0
|
O
|
B:GLN142
|
3.7
|
31.9
|
1.0
|
O16
|
B:QGF2
|
3.7
|
59.3
|
1.0
|
N
|
B:THR146
|
3.7
|
28.4
|
1.0
|
CD2
|
B:LEU182
|
3.9
|
54.3
|
1.0
|
C21
|
B:QGF2
|
3.9
|
67.4
|
1.0
|
CB
|
B:THR146
|
4.0
|
28.8
|
1.0
|
CA
|
B:THR146
|
4.0
|
28.9
|
1.0
|
C19
|
B:QGF2
|
4.1
|
66.0
|
1.0
|
CB
|
B:PHE145
|
4.2
|
29.8
|
1.0
|
C
|
B:PHE145
|
4.3
|
28.9
|
1.0
|
CG
|
B:LEU182
|
4.5
|
54.7
|
1.0
|
C20
|
B:QGF2
|
4.5
|
67.2
|
1.0
|
C14
|
B:QGF2
|
4.5
|
53.8
|
1.0
|
CD1
|
B:LEU182
|
4.6
|
54.6
|
1.0
|
C
|
B:GLN142
|
4.6
|
30.9
|
1.0
|
C13
|
B:QGF2
|
4.7
|
55.5
|
1.0
|
CG2
|
B:THR146
|
4.8
|
29.7
|
1.0
|
O
|
B:HOH346
|
4.8
|
40.3
|
1.0
|
CA
|
B:PHE145
|
4.9
|
29.1
|
1.0
|
CE1
|
B:PHE274
|
4.9
|
47.1
|
1.0
|
O
|
B:PHE145
|
4.9
|
29.6
|
1.0
|
CB
|
B:GLN142
|
4.9
|
32.0
|
1.0
|
CG
|
B:LEU118
|
5.0
|
42.9
|
1.0
|
|
Reference:
C.De Savi,
A.Pape,
J.G.Cumming,
A.Ting,
P.D.Smith,
J.N.Burrows,
M.Mills,
C.Davies,
S.Lamont,
D.Milne,
C.Cook,
P.Moore,
Y.Sawyer,
S.Gerhardt.
The Design and Synthesis of Novel N-Hydroxyformamide Inhibitors of Adam-TS4 For the Treatment of Osteoarthritis Bioorg.Med.Chem.Lett. V. 21 1376 2011.
ISSN: ISSN 0960-894X
PubMed: 21300546
DOI: 10.1016/J.BMCL.2011.01.036
Page generated: Sun Jul 21 02:42:14 2024
|