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Chlorine in PDB 3q3u: Trametes Cervina Lignin Peroxidase

Protein crystallography data

The structure of Trametes Cervina Lignin Peroxidase, PDB code: 3q3u was solved by F.R.Calvino, A.Romero, Y.Miki, A.T.Martinez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.90 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.904, 72.931, 95.232, 90.00, 90.00, 90.00
R / Rfree (%) 14.9 / 19.6

Other elements in 3q3u:

The structure of Trametes Cervina Lignin Peroxidase also contains other interesting chemical elements:

Iron (Fe) 1 atom
Calcium (Ca) 2 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Trametes Cervina Lignin Peroxidase (pdb code 3q3u). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Trametes Cervina Lignin Peroxidase, PDB code: 3q3u:

Chlorine binding site 1 out of 1 in 3q3u

Go back to Chlorine Binding Sites List in 3q3u
Chlorine binding site 1 out of 1 in the Trametes Cervina Lignin Peroxidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Trametes Cervina Lignin Peroxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl343

b:49.1
occ:1.00
O A:HOH678 3.0 18.5 1.0
NE1 A:TRP17 3.5 7.7 1.0
CB A:ALA130 4.0 9.2 1.0
CD1 A:TRP17 4.4 7.3 1.0
CE2 A:TRP17 4.5 7.0 1.0
O A:HOH374 4.6 8.0 1.0
CG2 A:VAL281 4.6 9.6 0.5
N A:GLY131 4.6 7.4 1.0
OD2 A:ASP107 4.7 7.1 1.0
O A:ALA13 4.8 11.9 1.0
CZ2 A:TRP17 4.8 7.7 1.0
C A:ALA130 4.9 9.0 1.0
O A:HOH486 4.9 12.3 1.0

Reference:

Y.Miki, F.R.Calvino, R.Pogni, S.Giansanti, F.J.Ruiz-Duenas, M.J.Martinez, R.Basosi, A.Romero, A.T.Martinez. Crystallographic, Kinetic, and Spectroscopic Study of the First Ligninolytic Peroxidase Presenting A Catalytic Tyrosine. J.Biol.Chem. V. 286 15525 2011.
ISSN: ISSN 0021-9258
PubMed: 21367853
DOI: 10.1074/JBC.M111.220996
Page generated: Sun Jul 21 02:43:42 2024

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