Atomistry » Chlorine » PDB 3q18-3qck » 3q41
Atomistry »
  Chlorine »
    PDB 3q18-3qck »
      3q41 »

Chlorine in PDB 3q41: Crystal Structure of the GLUN1 N-Terminal Domain (Ntd)

Protein crystallography data

The structure of Crystal Structure of the GLUN1 N-Terminal Domain (Ntd), PDB code: 3q41 was solved by A.N.Farina, K.Y.Blain, T.Maruo, W.Kwiatkowski, S.Choe, T.Nakagawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.24 / 3.40
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 164.679, 164.679, 147.258, 90.00, 90.00, 120.00
R / Rfree (%) 22.9 / 27.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the GLUN1 N-Terminal Domain (Ntd) (pdb code 3q41). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Crystal Structure of the GLUN1 N-Terminal Domain (Ntd), PDB code: 3q41:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 3q41

Go back to Chlorine Binding Sites List in 3q41
Chlorine binding site 1 out of 8 in the Crystal Structure of the GLUN1 N-Terminal Domain (Ntd)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the GLUN1 N-Terminal Domain (Ntd) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1

b:90.4
occ:1.00
 ND1 A:HIS146 3.7 59.3 1.0
CE2 A:TYR351 3.9 73.9 1.0
OH A:TYR351 3.9 75.1 1.0
CB A:HIS146 3.9 58.2 1.0
O A:LYS347 4.0 79.0 1.0
CB A:PRO142 4.0 53.7 1.0
CG A:HIS146 4.2 58.7 1.0
CZ A:TYR351 4.4 74.4 1.0
CG A:PRO142 4.5 53.5 1.0
CA A:PHE348 4.6 78.8 1.0
CB A:PHE348 4.7 79.2 1.0
O A:ALA349 4.7 76.6 1.0
CE1 A:HIS146 4.8 59.4 1.0
O A:HIS146 4.8 58.7 1.0
N A:ALA349 4.9 77.8 1.0
CD2 A:TYR351 5.0 74.2 1.0

Chlorine binding site 2 out of 8 in 3q41

Go back to Chlorine Binding Sites List in 3q41
Chlorine binding site 2 out of 8 in the Crystal Structure of the GLUN1 N-Terminal Domain (Ntd)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the GLUN1 N-Terminal Domain (Ntd) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl3

b:83.7
occ:1.00
 N A:ASN70 3.1 62.6 1.0
CD A:PRO69 3.3 64.0 1.0
N A:PRO69 3.4 64.0 1.0
CB A:ASN70 3.6 62.2 1.0
CB A:PRO69 3.8 63.8 1.0
CG A:PRO69 3.8 64.0 1.0
CG A:LYS68 3.9 63.7 1.0
CA A:ASN70 3.9 62.0 1.0
C A:LYS68 4.0 64.1 1.0
CA A:PRO69 4.0 63.7 1.0
C A:PRO69 4.0 63.3 1.0
CA A:LYS68 4.1 64.2 1.0
CB A:LYS68 4.1 64.1 1.0
O A:ASN70 4.6 61.3 1.0
C A:ASN70 4.8 61.3 1.0
CB A:GLN73 4.8 57.7 1.0
O A:LYS68 4.8 64.2 1.0
CG A:ASN70 5.0 63.0 1.0

Chlorine binding site 3 out of 8 in 3q41

Go back to Chlorine Binding Sites List in 3q41
Chlorine binding site 3 out of 8 in the Crystal Structure of the GLUN1 N-Terminal Domain (Ntd)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the GLUN1 N-Terminal Domain (Ntd) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl4

b:0.3
occ:1.00
 CB A:PHE197 3.7 74.3 1.0
N A:ASP198 3.7 74.1 1.0
CA A:PHE197 3.7 74.4 1.0
O A:ASN203 4.0 71.3 1.0
CG2 A:THR201 4.2 72.2 1.0
C A:PHE197 4.3 74.3 1.0
OG1 A:THR201 4.6 72.3 1.0
CB A:THR201 4.7 72.2 1.0
CB A:ASP198 4.8 74.4 1.0
O A:GLN196 4.8 75.1 1.0
CA A:ASP198 4.8 74.2 1.0
CG2 A:VAL204 4.9 70.8 1.0
CD2 A:LEU207 4.9 69.1 1.0
N A:PHE197 5.0 74.7 1.0

Chlorine binding site 4 out of 8 in 3q41

Go back to Chlorine Binding Sites List in 3q41
Chlorine binding site 4 out of 8 in the Crystal Structure of the GLUN1 N-Terminal Domain (Ntd)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the GLUN1 N-Terminal Domain (Ntd) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl5

b:88.2
occ:1.00
 N2 A:NAG407 4.0 85.8 1.0
NH1 A:ARG212 4.1 72.4 1.0
C8 A:NAG407 4.2 86.5 1.0
CD A:ARG212 4.4 72.2 1.0
CZ A:ARG212 4.4 72.5 1.0
NE A:ARG212 4.5 72.2 1.0
C7 A:NAG407 4.6 86.4 1.0
O A:LEU238 4.9 71.0 1.0
CB A:ASN239 4.9 72.3 1.0
C2 A:NAG407 4.9 85.3 1.0
O A:ASN239 5.0 71.4 1.0
ND2 A:ASN239 5.0 79.0 1.0

Chlorine binding site 5 out of 8 in 3q41

Go back to Chlorine Binding Sites List in 3q41
Chlorine binding site 5 out of 8 in the Crystal Structure of the GLUN1 N-Terminal Domain (Ntd)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of the GLUN1 N-Terminal Domain (Ntd) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl6

b:84.2
occ:1.00
 N B:ASP198 3.9 76.5 1.0
CB B:PHE197 4.0 76.7 1.0
OG1 B:THR201 4.0 74.6 1.0
CA B:PHE197 4.1 76.8 1.0
O B:ASN203 4.1 74.8 1.0
CG2 B:THR201 4.4 75.0 1.0
C B:PHE197 4.5 76.7 1.0
CB B:THR201 4.6 74.8 1.0
CB B:ASP198 4.8 76.6 1.0
CA B:VAL204 4.9 74.3 1.0
CA B:ASP198 4.9 76.4 1.0

Chlorine binding site 6 out of 8 in 3q41

Go back to Chlorine Binding Sites List in 3q41
Chlorine binding site 6 out of 8 in the Crystal Structure of the GLUN1 N-Terminal Domain (Ntd)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of the GLUN1 N-Terminal Domain (Ntd) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl7

b:95.3
occ:1.00
 ND2 B:ASN239 3.6 79.8 1.0
O5 B:NAG407 4.0 84.1 1.0
C1 B:NAG407 4.2 83.0 1.0
NH1 B:ARG212 4.2 73.4 1.0
CB B:ASN239 4.3 74.9 1.0
CG B:ASN239 4.4 76.9 1.0
CZ B:ARG212 4.5 73.8 1.0
O B:ASN239 4.5 74.4 1.0
O B:LEU238 4.7 73.3 1.0
O7 B:NAG407 4.7 84.7 1.0
CD B:ARG212 4.8 74.1 1.0
NE B:ARG212 4.8 73.8 1.0

Chlorine binding site 7 out of 8 in 3q41

Go back to Chlorine Binding Sites List in 3q41
Chlorine binding site 7 out of 8 in the Crystal Structure of the GLUN1 N-Terminal Domain (Ntd)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of the GLUN1 N-Terminal Domain (Ntd) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl2

b:75.3
occ:0.75
 O C:TYR128 2.8 62.6 1.0
O C:HIS134 3.0 65.3 1.0
O C:ASP130 3.2 64.2 1.0
O C:ILE133 3.3 65.1 1.0
CA C:GLY344 3.5 86.0 1.0
C C:HIS134 3.8 65.3 1.0
O C:SER129 3.8 63.5 1.0
C C:TYR128 4.0 62.4 1.0
C C:SER129 4.0 63.5 1.0
CA C:LEU135 4.1 65.1 1.0
CD2 C:LEU135 4.1 64.9 1.0
C C:ASP130 4.2 64.3 1.0
N C:LEU135 4.3 65.3 1.0
O C:PHE137 4.3 64.1 1.0
CA C:SER129 4.4 63.2 1.0
N C:GLY344 4.4 86.2 1.0
C C:ILE133 4.5 65.2 1.0
N C:ASP130 4.6 63.8 1.0
N C:SER129 4.6 62.8 1.0
CB C:HIS134 4.6 65.4 1.0
CA C:HIS134 4.7 65.4 1.0
C C:GLY344 4.8 85.9 1.0
CG C:LEU135 4.9 65.2 1.0
C C:LEU135 4.9 64.9 1.0
NZ C:LYS322 5.0 82.9 1.0

Chlorine binding site 8 out of 8 in 3q41

Go back to Chlorine Binding Sites List in 3q41
Chlorine binding site 8 out of 8 in the Crystal Structure of the GLUN1 N-Terminal Domain (Ntd)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of the GLUN1 N-Terminal Domain (Ntd) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl8

b:87.8
occ:1.00
 N C:ASP198 3.6 76.1 1.0
CB C:ASP198 3.7 76.2 1.0
OG1 C:THR201 3.9 74.6 1.0
O C:ASN203 4.3 72.5 1.0
CA C:ASP198 4.3 76.0 1.0
CG2 C:THR201 4.3 74.4 1.0
CA C:PHE197 4.5 76.5 1.0
C C:PHE197 4.6 76.3 1.0
CB C:PHE197 4.6 76.2 1.0
CB C:THR201 4.6 74.5 1.0
CG C:ASP198 4.8 76.9 1.0
OD1 C:ASP198 4.9 77.8 1.0

Reference:

A.N.Farina, K.Y.Blain, T.Maruo, W.Kwiatkowski, S.Choe, T.Nakagawa. Separation of Domain Contacts Is Required For Heterotetrameric Assembly of Functional Nmda Receptors. J.Neurosci. V. 31 3565 2011.
ISSN: ISSN 0270-6474
PubMed: 21389213
DOI: 10.1523/JNEUROSCI.6041-10.2011
Page generated: Fri Jul 11 09:17:42 2025

Last articles

Cl in 4D9Z
Cl in 4D9R
Cl in 4D98
Cl in 4DA0
Cl in 4D94
Cl in 4D7N
Cl in 4D8W
Cl in 4D7M
Cl in 4D8T
Cl in 4D4F
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy