Atomistry » Chlorine » PDB 3q12-3qcj » 3q4l
Atomistry »
  Chlorine »
    PDB 3q12-3qcj »
      3q4l »

Chlorine in PDB 3q4l: Structure of A Small Peptide Ligand Bound to E.Coli Dna Sliding Clamp

Enzymatic activity of Structure of A Small Peptide Ligand Bound to E.Coli Dna Sliding Clamp

All present enzymatic activity of Structure of A Small Peptide Ligand Bound to E.Coli Dna Sliding Clamp:
2.7.7.7;

Protein crystallography data

The structure of Structure of A Small Peptide Ligand Bound to E.Coli Dna Sliding Clamp, PDB code: 3q4l was solved by P.Wolff, V.Olieric, J.P.Briand, O.Chaloin, A.Dejaegere, P.Dumas, E.Ennifar, G.Guichard, J.Wagner, D.Burnouf, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.00 / 1.95
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 34.840, 79.570, 81.640, 65.28, 75.26, 82.22
R / Rfree (%) 19.9 / 23.2

Other elements in 3q4l:

The structure of Structure of A Small Peptide Ligand Bound to E.Coli Dna Sliding Clamp also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of A Small Peptide Ligand Bound to E.Coli Dna Sliding Clamp (pdb code 3q4l). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structure of A Small Peptide Ligand Bound to E.Coli Dna Sliding Clamp, PDB code: 3q4l:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3q4l

Go back to Chlorine Binding Sites List in 3q4l
Chlorine binding site 1 out of 4 in the Structure of A Small Peptide Ligand Bound to E.Coli Dna Sliding Clamp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of A Small Peptide Ligand Bound to E.Coli Dna Sliding Clamp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl372

b:50.3
occ:1.00
 CLZ C:ZCL372 0.0 50.3 1.0
CZ C:ZCL372 1.7 57.0 1.0
CE1 C:ZCL372 2.7 59.9 1.0
CE2 C:ZCL372 2.8 57.9 1.0
CLE1 C:ZCL372 3.0 66.7 1.0
CD1 A:LEU177 3.2 31.6 1.0
CG2 A:VAL247 3.6 45.8 1.0
CA A:TYR244 3.6 34.7 1.0
CB A:TYR244 3.7 34.6 1.0
CG A:PRO242 3.8 37.8 1.0
CG2 A:THR172 4.0 26.9 1.0
CD1 C:ZCL372 4.0 57.4 1.0
CD2 C:ZCL372 4.1 57.4 1.0
N A:TYR244 4.1 34.8 1.0
CB A:PRO242 4.1 32.6 1.0
OG1 A:THR172 4.6 28.5 1.0
CG C:ZCL372 4.6 57.0 1.0
CB A:THR172 4.6 29.7 1.0
C A:ASP243 4.6 38.4 1.0
CG A:LEU177 4.7 29.9 1.0
O A:ASP243 4.7 37.4 1.0
C A:PRO242 4.7 35.6 1.0
O A:PRO242 4.7 32.0 1.0
CB A:VAL247 4.8 45.6 1.0
CG1 A:VAL247 4.9 44.8 1.0
C A:TYR244 4.9 39.9 1.0
CD1 C:LEU371 4.9 27.7 1.0

Chlorine binding site 2 out of 4 in 3q4l

Go back to Chlorine Binding Sites List in 3q4l
Chlorine binding site 2 out of 4 in the Structure of A Small Peptide Ligand Bound to E.Coli Dna Sliding Clamp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of A Small Peptide Ligand Bound to E.Coli Dna Sliding Clamp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl372

b:66.7
occ:1.00
 CLE1 C:ZCL372 0.0 66.7 1.0
CE1 C:ZCL372 1.7 59.9 1.0
CD1 C:ZCL372 2.6 57.4 1.0
CZ C:ZCL372 2.7 57.0 1.0
CLZ C:ZCL372 3.0 50.3 1.0
CG2 A:THR172 3.3 26.9 1.0
OG1 A:THR172 3.3 28.5 1.0
CA A:GLY174 3.5 28.1 1.0
CB A:THR172 3.9 29.7 1.0
CG C:ZCL372 3.9 57.0 1.0
N A:GLY174 3.9 26.8 1.0
CG A:PRO242 3.9 37.8 1.0
CE2 C:ZCL372 4.0 57.9 1.0
CB C:LEU371 4.2 37.3 1.0
CD1 C:LEU371 4.2 27.7 1.0
C A:GLY174 4.3 32.5 1.0
CD2 C:ZCL372 4.4 57.4 1.0
O A:GLY174 4.6 32.0 1.0
CB A:PRO242 4.6 32.6 1.0
CD2 A:LEU155 4.8 32.8 1.0
CG C:LEU371 4.8 32.2 1.0
CD1 A:LEU177 5.0 31.6 1.0

Chlorine binding site 3 out of 4 in 3q4l

Go back to Chlorine Binding Sites List in 3q4l
Chlorine binding site 3 out of 4 in the Structure of A Small Peptide Ligand Bound to E.Coli Dna Sliding Clamp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of A Small Peptide Ligand Bound to E.Coli Dna Sliding Clamp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl372

b:62.3
occ:1.00
 CLZ D:ZCL372 0.0 62.3 1.0
CZ D:ZCL372 1.7 56.3 1.0
CE1 D:ZCL372 2.6 56.0 1.0
CE2 D:ZCL372 2.8 52.4 1.0
CLE1 D:ZCL372 2.8 60.6 1.0
CD1 B:LEU177 3.3 30.9 1.0
CG2 B:VAL247 3.7 37.7 1.0
C B:ASP243 3.8 41.5 1.0
O B:ASP243 3.8 41.0 1.0
CA B:TYR244 3.8 36.1 1.0
N B:TYR244 3.8 36.3 1.0
CG B:PRO242 3.9 52.3 1.0
CD1 D:ZCL372 3.9 52.8 1.0
CB B:PRO242 4.0 48.1 1.0
CD2 D:ZCL372 4.0 50.2 1.0
CG1 B:VAL247 4.2 37.6 1.0
N B:ASP243 4.3 42.4 1.0
C B:PRO242 4.4 47.5 1.0
CG D:ZCL372 4.5 50.0 1.0
O B:PRO242 4.5 47.1 1.0
CG2 B:THR172 4.6 36.2 1.0
CB B:VAL247 4.6 37.7 1.0
CA B:ASP243 4.6 40.5 1.0
C B:TYR244 4.7 38.6 1.0
CB B:TYR244 4.7 37.1 1.0
CG B:LEU177 4.7 30.7 1.0
CA B:PRO242 4.8 46.7 1.0
O B:TYR244 4.9 36.5 1.0

Chlorine binding site 4 out of 4 in 3q4l

Go back to Chlorine Binding Sites List in 3q4l
Chlorine binding site 4 out of 4 in the Structure of A Small Peptide Ligand Bound to E.Coli Dna Sliding Clamp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of A Small Peptide Ligand Bound to E.Coli Dna Sliding Clamp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl372

b:60.6
occ:1.00
 CLE1 D:ZCL372 0.0 60.6 1.0
CE1 D:ZCL372 1.7 56.0 1.0
CD1 D:ZCL372 2.6 52.8 1.0
CZ D:ZCL372 2.6 56.3 1.0
CLZ D:ZCL372 2.8 62.3 1.0
OG1 B:THR172 3.3 31.7 1.0
CD1 D:LEU371 3.6 33.7 1.0
CG2 B:THR172 3.6 36.2 1.0
CG D:ZCL372 3.9 50.0 1.0
CB D:LEU371 3.9 34.2 1.0
CE2 D:ZCL372 4.0 52.4 1.0
CB B:THR172 4.0 38.7 1.0
CG B:PRO242 4.0 52.3 1.0
CD1 B:LEU177 4.3 30.9 1.0
CA B:GLY174 4.4 33.6 1.0
CD2 D:ZCL372 4.4 50.2 1.0
CG D:LEU371 4.4 33.3 1.0
CB B:PRO242 4.5 48.1 1.0
N B:GLY174 4.6 33.6 1.0
CG1 B:VAL247 4.8 37.6 1.0
C B:GLY174 5.0 36.5 1.0

Reference:

P.Wolff, V.Olieric, J.P.Briand, O.Chaloin, A.Dejaegere, P.Dumas, E.Ennifar, G.Guichard, J.Wagner, D.Y.Burnouf. Structure-Based Design of Short Peptide Ligands Binding Onto the E. Coli Processivity Ring. J.Med.Chem. V. 54 4627 2011.
ISSN: ISSN 0022-2623
PubMed: 21619076
DOI: 10.1021/JM200311M
Page generated: Sat Dec 12 10:03:56 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy