Chlorine in PDB 3qu1: Peptide Deformylase From Vibrio Cholerae

All present enzymatic activity of Peptide Deformylase From Vibrio Cholerae:
3.5.1.88;

The structure of Peptide Deformylase From Vibrio Cholerae, PDB code: 3qu1 was solved by J.Osipiuk, R.Mulligan, L.Papazisi, W.F.Anderson, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.20 / 1.80
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	74.296, 74.296, 127.219, 90.00, 90.00, 90.00
R / Rfree (%)	16.7 / 20.4

The structure of Peptide Deformylase From Vibrio Cholerae also contains other interesting chemical elements:

Zinc

(Zn)

7 atoms

The binding sites of Chlorine atom in the Peptide Deformylase From Vibrio Cholerae (pdb code 3qu1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Peptide Deformylase From Vibrio Cholerae, PDB code: 3qu1:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Peptide Deformylase From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Peptide Deformylase From Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl508 b:33.0 occ:1.00 O A:HOH231 3.0 44.4 1.0 N A:ASP11 3.2 23.7 1.0 NE A:ARG15 3.3 31.8 1.0 O A:HOH173 3.4 40.6 1.0 CA A:PRO10 3.5 23.3 1.0 O A:ASP11 3.6 24.5 1.0 C A:PRO10 3.9 23.1 1.0 CG A:ARG15 3.9 31.7 1.0 CB A:ALA9 4.0 20.9 1.0 CD A:ARG15 4.0 32.9 1.0 CB A:PRO10 4.1 25.5 1.0 CZ A:ARG15 4.1 29.8 1.0 NH2 A:ARG15 4.1 30.4 1.0 C A:ASP11 4.2 24.4 1.0 CD1 A:LEU142 4.2 25.1 1.0 CA A:ASP11 4.4 22.4 1.0 CA A:ALA9 4.4 20.6 1.0 CB A:LEU14 4.4 21.7 1.0 CD1 A:LEU14 4.4 20.3 1.0 N A:PRO10 4.6 23.1 1.0

Chlorine binding site 2 out of 2 in the Peptide Deformylase From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Peptide Deformylase From Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl509 b:28.3 occ:1.00 O B:HOH308 3.0 33.6 1.0 NE B:ARG15 3.2 24.7 1.0 O B:HOH321 3.3 34.5 1.0 N B:ASP11 3.3 23.0 1.0 CA B:PRO10 3.5 21.7 1.0 O B:ASP11 3.6 24.3 1.0 CG B:ARG15 3.7 26.9 1.0 CB B:ALA9 3.9 22.5 1.0 C B:PRO10 3.9 22.2 1.0 CD B:ARG15 3.9 25.9 1.0 CA B:ALA9 4.1 21.8 1.0 CZ B:ARG15 4.1 26.1 1.0 CD1 B:LEU142 4.2 20.8 1.0 CB B:PRO10 4.2 20.3 1.0 CD1 B:LEU14 4.2 21.5 1.0 CB B:LEU14 4.2 21.1 1.0 C B:ASP11 4.2 25.0 1.0 NH2 B:ARG15 4.3 24.6 1.0 CA B:ASP11 4.4 23.3 1.0 N B:PRO10 4.5 21.8 1.0 C B:ALA9 4.8 22.8 1.0 CG B:LEU14 4.8 21.6 1.0

J.Osipiuk, R.Mulligan, L.Papazisi, W.F.Anderson, A.Joachimiak. Peptide Deformylase From Vibrio Cholerae. To Be Published.