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Chlorine in PDB 3r3q: Crystal Structure of the Yeast VPS23 Uev Domain

Protein crystallography data

The structure of Crystal Structure of the Yeast VPS23 Uev Domain, PDB code: 3r3q was solved by X.Ren, J.H.Hurley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.62 / 1.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 36.059, 47.139, 92.946, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 18.4

Other elements in 3r3q:

The structure of Crystal Structure of the Yeast VPS23 Uev Domain also contains other interesting chemical elements:

Zinc (Zn) 9 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Yeast VPS23 Uev Domain (pdb code 3r3q). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Yeast VPS23 Uev Domain, PDB code: 3r3q:

Chlorine binding site 1 out of 1 in 3r3q

Go back to Chlorine Binding Sites List in 3r3q
Chlorine binding site 1 out of 1 in the Crystal Structure of the Yeast VPS23 Uev Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Yeast VPS23 Uev Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl170

b:14.6
occ:0.93
ZN A:ZN166 2.2 10.9 1.0
OE1 A:GLU73 3.3 14.5 1.0
N A:SER111 3.3 14.7 1.0
CD1 A:LEU114 3.3 25.9 1.0
N3 A:IMD173 3.5 11.8 1.0
CA A:ILE110 3.8 16.8 1.0
CG A:PRO78 3.9 14.7 1.0
CD2 A:LEU114 3.9 22.6 1.0
CG2 A:ILE110 4.0 17.8 1.0
C A:ILE110 4.0 18.1 1.0
CB A:SER111 4.1 18.7 1.0
C4 A:IMD173 4.2 12.3 1.0
CB A:PRO78 4.2 14.4 1.0
CD A:PRO78 4.2 13.3 1.0
CG A:LEU114 4.3 23.9 1.0
CA A:SER111 4.3 16.7 1.0
O A:HOH218 4.3 15.7 0.8
CB A:ILE110 4.3 14.8 1.0
CD A:GLU73 4.4 11.7 1.0
C2 A:IMD173 4.4 13.8 1.0
O A:THR109 4.5 18.1 1.0
CG1 A:ILE110 4.7 16.8 1.0
OE2 A:GLU73 4.8 15.9 1.0
N A:ILE110 4.9 15.4 1.0
O A:SER111 4.9 21.8 1.0

Reference:

X.Ren, J.H.Hurley. Structural Basis For Endosomal Recruitment of Escrt-I By Escrt-0 in Yeast. Embo J. V. 30 2130 2011.
ISSN: ISSN 0261-4189
PubMed: 21505419
DOI: 10.1038/EMBOJ.2011.122
Page generated: Sat Dec 12 10:06:08 2020

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