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Chlorine in PDB 3rnx: Crystal Structure of Lysozyme in 30% Ethanol

Enzymatic activity of Crystal Structure of Lysozyme in 30% Ethanol

All present enzymatic activity of Crystal Structure of Lysozyme in 30% Ethanol:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Lysozyme in 30% Ethanol, PDB code: 3rnx was solved by P.Sharma, A.K.Solanki, Ashish, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.42 / 1.86
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.242, 78.242, 36.988, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 20.7

Other elements in 3rnx:

The structure of Crystal Structure of Lysozyme in 30% Ethanol also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Lysozyme in 30% Ethanol (pdb code 3rnx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the Crystal Structure of Lysozyme in 30% Ethanol, PDB code: 3rnx:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Chlorine binding site 1 out of 9 in 3rnx

Go back to Chlorine Binding Sites List in 3rnx
Chlorine binding site 1 out of 9 in the Crystal Structure of Lysozyme in 30% Ethanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Lysozyme in 30% Ethanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl138

b:23.2
occ:1.00
 OG A:SER24 3.0 15.2 1.0
N A:GLY26 3.2 13.3 1.0
CB A:SER24 3.5 17.6 1.0
CA A:GLY26 3.5 15.9 1.0
CA A:GLN121 3.6 19.7 1.0
N A:GLN121 4.0 18.3 1.0
CD1 A:ILE124 4.0 25.3 1.0
CB A:GLN121 4.0 20.3 1.0
N A:LEU25 4.2 18.0 1.0
CG A:GLN121 4.2 26.4 1.0
CG2 A:VAL120 4.3 19.3 1.0
C A:SER24 4.3 18.2 1.0
C A:VAL120 4.3 17.1 1.0
C A:LEU25 4.3 14.5 1.0
O A:VAL120 4.4 16.9 1.0
CG1 A:ILE124 4.4 19.1 1.0
CA A:SER24 4.5 15.8 1.0
C A:GLY26 4.6 16.2 1.0
N A:ASN27 4.7 13.8 1.0
CA A:LEU25 4.7 15.6 1.0
C A:GLN121 4.8 16.6 1.0
O A:SER24 4.8 15.4 1.0
O A:GLN121 5.0 17.0 1.0

Chlorine binding site 2 out of 9 in 3rnx

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Chlorine binding site 2 out of 9 in the Crystal Structure of Lysozyme in 30% Ethanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Lysozyme in 30% Ethanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl139

b:23.1
occ:1.00
 O A:HOH159 3.0 13.8 1.0
O A:HOH186 3.1 26.7 1.0
N A:THR69 3.2 15.8 1.0
O A:HOH225 3.3 30.7 1.0
O A:THR69 3.4 17.7 1.0
N A:ARG68 3.4 16.1 1.0
C A:GLY67 3.5 21.2 1.0
CA A:GLY67 3.5 17.7 1.0
N A:GLY67 3.7 17.3 1.0
OD1 A:ASN65 3.7 17.2 1.0
OG A:SER72 3.7 19.9 1.0
C A:THR69 3.7 20.0 1.0
CA A:THR69 3.9 19.5 1.0
C2 A:EOH136 4.1 13.5 1.0
C A:ARG68 4.2 18.7 1.0
O A:GLY67 4.2 18.6 1.0
CB A:THR69 4.2 18.2 1.0
CA A:ARG68 4.2 18.1 1.0
OD1 A:ASP66 4.3 15.1 1.0
N A:PRO70 4.6 21.6 1.0
C1 A:EOH136 4.7 25.7 1.0
NA A:NA148 4.8 21.1 1.0
OG1 A:THR69 4.8 14.2 1.0
C A:ASP66 4.8 14.7 1.0
N A:ASP66 4.9 15.0 1.0
CG A:ASN65 4.9 17.8 1.0
O A:HOH155 4.9 23.1 0.5

Chlorine binding site 3 out of 9 in 3rnx

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Chlorine binding site 3 out of 9 in the Crystal Structure of Lysozyme in 30% Ethanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Lysozyme in 30% Ethanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl140

b:29.3
occ:1.00
 OG1 A:THR51 2.7 14.0 1.0
OD2 A:ASP66 2.8 15.1 1.0
NE A:ARG68 3.0 26.0 1.0
O A:GLY49 3.0 21.4 1.0
OG1 A:THR69 3.1 14.2 1.0
N A:THR51 3.4 13.8 1.0
CG A:ARG68 3.4 19.5 1.0
CB A:THR51 3.5 14.3 1.0
C A:SER50 3.5 13.6 1.0
CG A:ASP66 3.7 14.9 1.0
OG A:SER60 3.7 14.6 1.0
CA A:SER50 3.7 16.8 1.0
CD A:ARG68 3.7 20.0 1.0
OD1 A:ASP66 3.8 15.1 1.0
O A:ARG68 3.8 22.0 1.0
CZ A:ARG68 3.9 26.7 1.0
NH2 A:ARG68 4.0 21.9 1.0
C A:GLY49 4.0 22.0 1.0
CA A:THR51 4.0 13.4 1.0
O A:HOH216 4.0 24.1 1.0
O A:SER50 4.2 15.8 1.0
C A:ARG68 4.3 18.7 1.0
CB A:THR69 4.3 18.2 1.0
N A:SER50 4.4 18.6 1.0
OH A:TYR53 4.4 13.2 1.0
CD A:ARG45 4.5 23.7 1.0
CB A:ARG68 4.7 20.6 1.0
CB A:SER60 4.7 14.2 1.0
N A:THR69 4.7 15.8 1.0
CA A:THR69 4.7 19.5 1.0
CG2 A:THR69 4.8 16.2 1.0
CG2 A:THR51 4.8 14.8 1.0
NE A:ARG45 4.9 31.5 1.0
CB A:SER50 4.9 15.3 1.0
CB A:ASP66 5.0 13.6 1.0

Chlorine binding site 4 out of 9 in 3rnx

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Chlorine binding site 4 out of 9 in the Crystal Structure of Lysozyme in 30% Ethanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Lysozyme in 30% Ethanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl141

b:30.8
occ:1.00
 NZ A:LYS33 3.7 19.8 1.0
CE2 A:PHE38 3.8 16.6 1.0
CZ3 A:TRP123 3.9 18.8 1.0
CE A:LYS33 3.9 19.4 1.0
CD A:LYS33 4.2 13.1 1.0
CB A:ARG5 4.3 19.4 1.0
CD A:ARG5 4.3 19.1 1.0
CZ A:PHE38 4.5 15.2 1.0
CD2 A:PHE38 4.6 18.2 1.0
CH2 A:TRP123 4.7 19.8 1.0
CG A:ARG5 4.7 15.3 1.0
CE3 A:TRP123 4.8 17.7 1.0
NE A:ARG5 4.9 23.4 1.0

Chlorine binding site 5 out of 9 in 3rnx

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Chlorine binding site 5 out of 9 in the Crystal Structure of Lysozyme in 30% Ethanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Lysozyme in 30% Ethanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl142

b:38.0
occ:1.00
 N A:ASN74 3.1 18.4 1.0
NE A:ARG73 3.3 27.4 1.0
CB A:ARG73 3.8 22.1 1.0
C A:ASN74 3.9 19.0 1.0
CA A:ARG73 3.9 20.4 1.0
O A:ASN74 3.9 17.7 1.0
CA A:ASN74 3.9 20.3 1.0
CD A:ARG73 3.9 25.6 1.0
C A:ARG73 4.0 20.9 1.0
CB A:ASN74 4.2 19.3 1.0
CZ A:ARG73 4.2 26.3 1.0
NH2 A:ARG73 4.3 27.7 1.0
N A:LEU75 4.4 18.1 1.0
CD2 A:LEU75 4.4 26.2 1.0
CG A:ARG73 4.5 22.6 1.0
O A:EOH136 4.7 36.3 1.0
CA A:LEU75 4.9 17.6 1.0
C1 A:EOH136 4.9 25.7 1.0

Chlorine binding site 6 out of 9 in 3rnx

Go back to Chlorine Binding Sites List in 3rnx
Chlorine binding site 6 out of 9 in the Crystal Structure of Lysozyme in 30% Ethanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Lysozyme in 30% Ethanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl143

b:30.4
occ:1.00
 ND2 A:ASN65 3.3 24.0 1.0
O A:HOH170 3.3 22.1 1.0
CB A:PRO79 3.6 15.8 1.0
CA A:PRO79 3.8 17.6 1.0
CB A:ASN65 4.0 17.4 1.0
N A:PRO79 4.0 17.8 1.0
CG A:ASN65 4.1 17.8 1.0
CD A:PRO79 4.2 21.3 1.0
O A:ASN65 4.4 15.2 1.0
CG A:PRO79 4.4 21.0 1.0
C A:ILE78 4.6 15.9 1.0
O A:ILE78 4.9 16.9 1.0
C A:ASN65 5.0 13.4 1.0

Chlorine binding site 7 out of 9 in 3rnx

Go back to Chlorine Binding Sites List in 3rnx
Chlorine binding site 7 out of 9 in the Crystal Structure of Lysozyme in 30% Ethanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Lysozyme in 30% Ethanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl144

b:28.5
occ:1.00
 OD1 A:ASN39 2.8 14.8 1.0
N A:LYS1 2.8 16.6 1.0
NE2 A:GLN41 2.9 17.5 1.0
CG A:GLN41 3.4 13.5 1.0
CA A:LYS1 3.5 18.0 1.0
CD A:GLN41 3.6 14.3 1.0
C A:LYS1 3.6 16.4 1.0
CG A:ASN39 3.7 15.1 1.0
CB A:GLN41 3.8 14.9 1.0
O A:LYS1 3.9 16.6 1.0
N A:VAL2 4.0 15.6 1.0
ND2 A:ASN39 4.1 17.1 1.0
CG2 A:VAL2 4.1 18.1 1.0
N A:GLN41 4.3 11.7 1.0
OG1 A:THR40 4.6 14.3 1.0
O A:HOH164 4.7 19.1 1.0
CA A:GLN41 4.7 16.4 1.0
OE1 A:GLN41 4.8 14.0 1.0
N A:THR40 4.8 10.8 1.0
CA A:VAL2 4.9 15.1 1.0
CB A:ASN39 5.0 16.0 1.0
CB A:LYS1 5.0 17.7 1.0

Chlorine binding site 8 out of 9 in 3rnx

Go back to Chlorine Binding Sites List in 3rnx
Chlorine binding site 8 out of 9 in the Crystal Structure of Lysozyme in 30% Ethanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Lysozyme in 30% Ethanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl145

b:28.9
occ:1.00
 OG1 A:THR43 2.7 19.1 1.0
O A:GLN41 2.8 16.0 1.0
N A:THR43 3.2 15.3 1.0
CB A:THR43 3.5 15.8 1.0
CG2 A:THR43 3.6 13.7 1.0
C A:ALA42 3.8 16.4 1.0
C A:GLN41 3.9 13.1 1.0
CA A:THR43 3.9 13.2 1.0
CA A:ALA42 4.0 15.0 1.0
O A:THR43 4.3 20.5 1.0
N A:ALA42 4.4 11.0 1.0
C A:THR43 4.6 17.8 1.0
O A:ALA42 4.6 12.4 1.0

Chlorine binding site 9 out of 9 in 3rnx

Go back to Chlorine Binding Sites List in 3rnx
Chlorine binding site 9 out of 9 in the Crystal Structure of Lysozyme in 30% Ethanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Lysozyme in 30% Ethanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl146

b:19.7
occ:1.00
 OH A:TYR23 3.0 13.4 1.0
CZ A:TYR23 3.7 11.4 1.0
CE2 A:TYR23 3.8 14.4 1.0
CA A:GLY104 4.1 16.2 1.0
O A:ARG21 4.6 15.9 1.0
N A:GLY104 4.7 15.8 1.0
CE1 A:TYR23 4.9 12.5 1.0
CD2 A:TYR23 5.0 11.8 1.0

Reference:

P.Sharma, A.K.Solanki, Ashish. Crystal Structure of Lysozyme in 30% Ethanol To Be Published.
Page generated: Sat Dec 12 10:07:34 2020

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