Chlorine in PDB 3ro3: Crystal Structure of Lgn/Minscuteable Complex
Protein crystallography data
The structure of Crystal Structure of Lgn/Minscuteable Complex, PDB code: 3ro3
was solved by
J.Zhu,
W.Wen,
Y.Shang,
Z.Wei,
Z.Pan,
W.Wang,
M.Zhang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
20.00 /
1.10
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
88.196,
75.606,
35.346,
90.00,
105.99,
90.00
|
R / Rfree (%)
|
n/a /
15
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Lgn/Minscuteable Complex
(pdb code 3ro3). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of Lgn/Minscuteable Complex, PDB code: 3ro3:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 3ro3
Go back to
Chlorine Binding Sites List in 3ro3
Chlorine binding site 1 out
of 5 in the Crystal Structure of Lgn/Minscuteable Complex
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Lgn/Minscuteable Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl352
b:13.0
occ:0.69
|
NZ
|
A:LYS260
|
3.1
|
24.1
|
1.0
|
O
|
A:HOH54
|
3.1
|
20.1
|
1.0
|
NZ
|
A:LYS226
|
3.2
|
20.2
|
1.0
|
O
|
A:HOH143
|
3.6
|
37.3
|
1.0
|
CE1
|
A:TYR238
|
3.7
|
9.2
|
1.0
|
CE
|
A:LYS260
|
4.0
|
20.0
|
1.0
|
CD2
|
A:LEU222
|
4.0
|
9.9
|
1.0
|
CD
|
A:LYS260
|
4.1
|
15.8
|
1.0
|
OH
|
A:TYR238
|
4.1
|
11.6
|
1.0
|
CE
|
A:LYS226
|
4.3
|
12.8
|
1.0
|
CZ
|
A:TYR238
|
4.4
|
9.5
|
1.0
|
CE2
|
A:TYR257
|
4.5
|
11.1
|
1.0
|
O
|
A:HOH375
|
4.7
|
36.2
|
1.0
|
CD1
|
A:TYR238
|
4.8
|
8.7
|
1.0
|
O
|
A:HOH63
|
4.9
|
13.4
|
1.0
|
O
|
A:HOH367
|
4.9
|
26.8
|
1.0
|
CG
|
A:LEU222
|
5.0
|
8.4
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 3ro3
Go back to
Chlorine Binding Sites List in 3ro3
Chlorine binding site 2 out
of 5 in the Crystal Structure of Lgn/Minscuteable Complex
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Lgn/Minscuteable Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl2
b:20.5
occ:1.00
|
OE1
|
A:GLN333
|
1.8
|
13.3
|
0.5
|
CD
|
A:GLN333
|
2.9
|
11.1
|
0.5
|
O
|
A:HOH435
|
3.2
|
20.1
|
0.5
|
C
|
A:ASN330
|
3.2
|
11.6
|
1.0
|
N
|
A:ASP332
|
3.3
|
13.5
|
1.0
|
CA
|
A:ASN330
|
3.4
|
10.9
|
1.0
|
CB
|
A:ASN330
|
3.5
|
9.9
|
1.0
|
N
|
A:GLN333
|
3.5
|
12.1
|
1.0
|
NE2
|
A:GLN333
|
3.5
|
11.4
|
0.5
|
O
|
A:ASN330
|
3.5
|
11.8
|
1.0
|
N
|
A:HIS331
|
3.5
|
12.4
|
1.0
|
O
|
A:HOH117
|
3.6
|
37.9
|
1.0
|
CB
|
A:ASP332
|
3.6
|
18.6
|
1.0
|
CG
|
A:GLN333
|
3.7
|
12.2
|
0.5
|
CA
|
A:ASP332
|
3.8
|
13.1
|
1.0
|
O
|
A:HOH436
|
3.9
|
22.0
|
0.5
|
C
|
A:ASP332
|
4.1
|
13.6
|
1.0
|
CG
|
A:GLN333
|
4.2
|
9.5
|
0.5
|
OD2
|
A:ASP332
|
4.2
|
49.2
|
1.0
|
C
|
A:HIS331
|
4.2
|
12.3
|
1.0
|
CG
|
A:ASN330
|
4.3
|
9.8
|
1.0
|
CG
|
A:ASP332
|
4.3
|
25.4
|
1.0
|
CB
|
A:GLN333
|
4.3
|
11.4
|
0.5
|
CB
|
A:GLN333
|
4.3
|
10.0
|
0.5
|
O
|
A:HOH150
|
4.4
|
40.2
|
1.0
|
CA
|
A:HIS331
|
4.4
|
13.5
|
0.4
|
CA
|
A:HIS331
|
4.5
|
12.7
|
0.6
|
CA
|
A:GLN333
|
4.5
|
11.1
|
0.5
|
CA
|
A:GLN333
|
4.5
|
11.2
|
0.5
|
OD1
|
A:ASN330
|
4.7
|
11.2
|
1.0
|
N
|
A:ASN330
|
4.8
|
12.2
|
1.0
|
CD
|
A:GLN333
|
4.8
|
11.8
|
0.5
|
NE2
|
A:GLN333
|
4.9
|
13.8
|
0.5
|
ND2
|
A:ASN330
|
4.9
|
9.9
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 3ro3
Go back to
Chlorine Binding Sites List in 3ro3
Chlorine binding site 3 out
of 5 in the Crystal Structure of Lgn/Minscuteable Complex
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Lgn/Minscuteable Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl3
b:19.1
occ:1.00
|
O
|
A:HOH400
|
2.5
|
40.5
|
1.0
|
OG
|
A:SER239
|
3.0
|
15.0
|
0.4
|
OG
|
A:SER239
|
3.1
|
7.7
|
0.6
|
O
|
A:HOH364
|
3.1
|
12.0
|
1.0
|
NE2
|
A:GLN276
|
3.2
|
19.9
|
1.0
|
OG
|
A:SER277
|
3.5
|
16.7
|
0.5
|
CB
|
A:SER239
|
3.6
|
7.6
|
0.6
|
CG2
|
A:THR261
|
3.6
|
24.9
|
0.6
|
CA
|
A:SER277
|
3.7
|
8.3
|
0.6
|
CB
|
A:SER277
|
3.8
|
9.6
|
0.6
|
CA
|
A:SER277
|
3.8
|
8.9
|
0.5
|
CB
|
A:SER239
|
3.8
|
10.9
|
0.4
|
O
|
A:HOH420
|
3.9
|
56.7
|
1.0
|
CD1
|
A:TYR258
|
3.9
|
7.8
|
1.0
|
CG
|
A:GLN276
|
4.0
|
16.2
|
1.0
|
CD
|
A:GLN276
|
4.0
|
19.8
|
1.0
|
N
|
A:SER277
|
4.1
|
8.5
|
1.0
|
CE1
|
A:TYR258
|
4.1
|
7.8
|
1.0
|
CB
|
A:SER277
|
4.1
|
11.0
|
0.5
|
OG1
|
A:THR261
|
4.1
|
31.6
|
0.5
|
CA
|
A:SER239
|
4.2
|
7.1
|
0.6
|
CA
|
A:SER239
|
4.2
|
8.2
|
0.4
|
CG2
|
A:THR261
|
4.4
|
6.1
|
0.5
|
C
|
A:GLN276
|
4.4
|
8.5
|
1.0
|
OG
|
A:SER280
|
4.4
|
10.6
|
1.0
|
CB
|
A:THR261
|
4.5
|
11.4
|
0.5
|
O
|
A:GLN276
|
4.5
|
8.8
|
1.0
|
CB
|
A:SER280
|
4.7
|
8.9
|
1.0
|
CB
|
A:THR261
|
4.8
|
12.8
|
0.6
|
CB
|
A:GLN276
|
4.8
|
12.2
|
1.0
|
CG
|
A:TYR258
|
5.0
|
7.3
|
1.0
|
O
|
A:SER239
|
5.0
|
7.7
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 3ro3
Go back to
Chlorine Binding Sites List in 3ro3
Chlorine binding site 4 out
of 5 in the Crystal Structure of Lgn/Minscuteable Complex
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Lgn/Minscuteable Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl4
b:20.3
occ:0.60
|
O
|
A:HOH450
|
2.7
|
43.1
|
1.0
|
NE2
|
A:HIS336
|
3.3
|
17.6
|
1.0
|
NE2
|
A:GLN306
|
3.5
|
18.3
|
1.0
|
CE
|
A:LYS340
|
3.6
|
39.7
|
1.0
|
CD
|
A:LYS340
|
3.6
|
30.2
|
1.0
|
CE1
|
A:PHE337
|
4.0
|
12.8
|
1.0
|
CD2
|
A:LEU302
|
4.1
|
14.6
|
1.0
|
CE1
|
A:HIS336
|
4.2
|
21.3
|
1.0
|
CD2
|
A:HIS336
|
4.3
|
13.9
|
1.0
|
NZ
|
A:LYS340
|
4.3
|
41.6
|
1.0
|
CZ
|
A:PHE337
|
4.4
|
13.2
|
1.0
|
CD
|
A:GLN306
|
4.5
|
15.2
|
1.0
|
OE1
|
A:GLN306
|
4.7
|
17.4
|
1.0
|
CG
|
A:LEU302
|
4.9
|
11.6
|
1.0
|
O
|
A:HOH41
|
4.9
|
21.1
|
1.0
|
CD1
|
A:LEU302
|
4.9
|
17.1
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 3ro3
Go back to
Chlorine Binding Sites List in 3ro3
Chlorine binding site 5 out
of 5 in the Crystal Structure of Lgn/Minscuteable Complex
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Lgn/Minscuteable Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl5
b:24.6
occ:1.00
|
NZ
|
A:LYS300
|
3.2
|
17.6
|
0.5
|
NH1
|
A:ARG266
|
3.2
|
16.5
|
1.0
|
NH2
|
A:ARG266
|
3.3
|
15.0
|
1.0
|
O
|
A:HOH76
|
3.3
|
24.2
|
1.0
|
CE
|
A:LYS300
|
3.4
|
17.4
|
0.5
|
O
|
A:HOH457
|
3.4
|
30.9
|
0.5
|
CZ
|
A:ARG266
|
3.7
|
13.7
|
1.0
|
CE1
|
A:TYR297
|
3.9
|
13.7
|
1.0
|
CE
|
A:LYS300
|
3.9
|
15.5
|
0.5
|
CD
|
A:LYS300
|
4.1
|
12.1
|
0.5
|
OH
|
A:TYR297
|
4.1
|
24.4
|
1.0
|
CD2
|
A:LEU262
|
4.1
|
13.1
|
1.0
|
NZ
|
A:LYS300
|
4.3
|
20.3
|
0.5
|
CD
|
A:LYS300
|
4.3
|
11.9
|
0.5
|
CZ
|
A:TYR297
|
4.4
|
16.6
|
1.0
|
CD1
|
A:TYR297
|
4.8
|
10.6
|
1.0
|
|
Reference:
J.Zhu,
W.Wen,
Z.Zheng,
Y.Shang,
Z.Wei,
Z.Xiao,
Z.Pan,
Q.Du,
W.Wang,
M.Zhang.
Lgn/Minsc and Lgn/Numa Complex Structures Suggest Distinct Functions in Asymmetric Cell Division For the PAR3/Minsc/Lgn and G[Alpha]I/Lgn/Numa Pathways Mol.Cell V. 43 418 2011.
ISSN: ISSN 1097-2765
PubMed: 21816348
DOI: 10.1016/J.MOLCEL.2011.07.011
Page generated: Sun Jul 21 03:48:14 2024
|