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Chlorine in PDB 3rt5: Lysozyme in 30% Propanol

Enzymatic activity of Lysozyme in 30% Propanol

All present enzymatic activity of Lysozyme in 30% Propanol:
3.2.1.17;

Protein crystallography data

The structure of Lysozyme in 30% Propanol, PDB code: 3rt5 was solved by P.Sharma, A.K.Solanki, Ashish, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.36 / 1.75
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.935, 77.935, 36.961, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 21.4

Other elements in 3rt5:

The structure of Lysozyme in 30% Propanol also contains other interesting chemical elements:

Sodium (Na) 8 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Chlorine atom in the Lysozyme in 30% Propanol (pdb code 3rt5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 14 binding sites of Chlorine where determined in the Lysozyme in 30% Propanol, PDB code: 3rt5:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 14 in 3rt5

Go back to Chlorine Binding Sites List in 3rt5
Chlorine binding site 1 out of 14 in the Lysozyme in 30% Propanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Lysozyme in 30% Propanol within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Cl147

b:27.4
occ:1.00
 O X:HOH220 3.0 20.8 1.0
O X:HOH208 3.1 31.9 1.0
N X:THR69 3.2 21.1 1.0
O X:THR69 3.4 27.1 1.0
N X:ARG68 3.5 22.8 1.0
OD1 X:ASN65 3.6 23.7 1.0
C X:GLY67 3.6 24.8 1.0
CA X:GLY67 3.6 23.2 1.0
N X:GLY67 3.7 21.3 1.0
OG X:SER72 3.7 25.5 1.0
C X:THR69 3.7 24.7 1.0
CA X:THR69 3.9 21.8 1.0
C1 X:IPA140 4.0 18.2 1.0
C2 X:IPA140 4.1 32.1 1.0
O X:GLY67 4.2 24.7 1.0
CB X:THR69 4.2 21.8 1.0
C X:ARG68 4.2 25.6 1.0
OD1 X:ASP66 4.3 21.4 1.0
CA X:ARG68 4.3 23.6 1.0
N X:PRO70 4.6 28.3 1.0
O X:HOH219 4.6 16.4 1.0
O2 X:IPA140 4.7 41.9 1.0
C X:ASP66 4.8 20.2 1.0
CG X:ASN65 4.8 22.5 1.0
OG1 X:THR69 4.8 20.8 1.0
N X:ASP66 4.8 17.5 1.0
O X:HOH174 4.9 26.3 0.5
CB X:SER72 5.0 23.7 1.0

Chlorine binding site 2 out of 14 in 3rt5

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Chlorine binding site 2 out of 14 in the Lysozyme in 30% Propanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Lysozyme in 30% Propanol within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Cl148

b:27.8
occ:1.00
 OG X:SER24 3.0 22.0 1.0
N X:GLY26 3.2 20.6 1.0
CB X:SER24 3.5 23.2 1.0
CA X:GLY26 3.5 21.1 1.0
CA X:GLN121 3.6 25.3 1.0
CD1 X:ILE124 3.8 30.5 1.0
N X:GLN121 3.9 23.0 1.0
OE1 X:GLN121 4.1 41.4 1.0
N X:LEU25 4.2 20.0 1.0
CB X:GLN121 4.2 28.4 1.0
CG2 X:VAL120 4.2 25.5 1.0
C X:VAL120 4.3 22.4 1.0
O X:VAL120 4.3 22.2 1.0
C X:SER24 4.3 22.9 1.0
C X:LEU25 4.3 20.4 1.0
CG1 X:ILE124 4.4 26.9 1.0
CA X:SER24 4.5 22.4 1.0
C X:GLY26 4.6 20.2 1.0
N X:ASN27 4.7 18.9 1.0
O X:SER24 4.7 20.8 1.0
CA X:LEU25 4.7 19.5 1.0
C X:GLN121 4.8 23.9 1.0
O X:HOH228 4.8 35.5 1.0
CD X:GLN121 4.9 39.2 1.0

Chlorine binding site 3 out of 14 in 3rt5

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Chlorine binding site 3 out of 14 in the Lysozyme in 30% Propanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Lysozyme in 30% Propanol within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Cl149

b:35.2
occ:1.00
 O X:HOH225 3.3 45.1 1.0
N X:ILE88 3.4 26.0 1.0
O X:HOH173 3.5 34.5 1.0
CG1 X:ILE88 3.7 20.8 1.0
NH2 X:ARG14 3.8 35.7 1.0
CA X:ASP87 4.0 23.7 1.0
NE2 X:HIS15 4.0 31.4 1.0
O X:SER86 4.1 27.4 1.0
C X:ASP87 4.2 24.8 1.0
CG2 X:ILE88 4.2 23.1 1.0
CB X:ALA11 4.2 22.9 1.0
OD1 X:ASP87 4.2 27.7 1.0
CB X:ILE88 4.2 20.3 1.0
CZ X:PHE3 4.3 23.9 1.0
CA X:ILE88 4.3 22.3 1.0
CD1 X:ILE88 4.5 23.0 1.0
CD2 X:HIS15 4.6 27.4 1.0
CE2 X:PHE3 4.7 23.2 1.0
CG X:ASP87 4.8 31.5 1.0
CB X:ASP87 4.9 28.9 1.0
N X:ASP87 4.9 23.5 1.0
C X:SER86 5.0 24.9 1.0
N X:THR89 5.0 23.6 1.0

Chlorine binding site 4 out of 14 in 3rt5

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Chlorine binding site 4 out of 14 in the Lysozyme in 30% Propanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Lysozyme in 30% Propanol within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Cl150

b:32.3
occ:1.00
 O X:TYR53 2.9 16.8 1.0
N X:LEU56 2.9 20.8 1.0
OG X:SER91 3.0 21.8 1.0
N X:ILE55 3.4 18.2 1.0
C X:GLY54 3.4 18.2 1.0
N X:GLN57 3.5 17.9 1.0
CA X:LEU56 3.6 19.4 1.0
CA X:GLY54 3.6 18.1 1.0
C X:LEU56 3.6 18.5 1.0
CB X:SER91 3.6 20.2 1.0
CG1 X:ILE58 3.8 20.8 1.0
CD1 X:ILE58 3.8 21.6 1.0
CB X:LEU56 3.8 20.7 1.0
C X:TYR53 3.9 16.2 1.0
N X:ILE58 3.9 18.4 1.0
O X:GLY54 3.9 18.1 1.0
C X:ILE55 4.0 20.7 1.0
O X:HOH214 4.1 24.6 1.0
CA X:ILE55 4.2 19.4 1.0
N X:GLY54 4.2 17.1 1.0
CG2 X:ILE55 4.2 24.7 1.0
CB X:ILE58 4.2 18.4 1.0
O X:LEU83 4.3 22.2 1.0
CD2 X:LEU83 4.4 26.1 1.0
O X:LEU56 4.4 19.9 1.0
CA X:GLN57 4.5 17.3 1.0
CB X:LEU83 4.5 21.6 1.0
CA X:SER91 4.5 21.8 1.0
C X:GLN57 4.7 19.1 1.0
CA X:ILE58 4.7 19.2 1.0
CB X:ILE55 4.8 25.0 1.0
CG X:LEU56 4.8 21.1 1.0
CG X:LEU83 4.9 19.9 1.0

Chlorine binding site 5 out of 14 in 3rt5

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Chlorine binding site 5 out of 14 in the Lysozyme in 30% Propanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Lysozyme in 30% Propanol within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Cl151

b:35.4
occ:1.00
 O X:HOH223 3.1 27.6 1.0
ND2 X:ASN65 3.3 25.4 1.0
CB X:PRO79 3.6 22.9 1.0
CA X:PRO79 3.7 23.6 1.0
N X:PRO79 4.0 22.0 1.0
CB X:ASN65 4.1 23.6 1.0
CG X:ASN65 4.2 22.5 1.0
O X:ASN65 4.4 20.4 1.0
CD X:PRO79 4.4 24.2 1.0
CG X:PRO79 4.4 28.0 1.0
C X:ILE78 4.7 22.4 1.0
O X:ILE78 4.9 20.7 1.0
C X:ASN65 5.0 19.0 1.0

Chlorine binding site 6 out of 14 in 3rt5

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Chlorine binding site 6 out of 14 in the Lysozyme in 30% Propanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Lysozyme in 30% Propanol within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Cl152

b:34.6
occ:1.00
 OG1 X:THR51 2.7 18.6 1.0
NE X:ARG68 2.8 32.6 1.0
OD2 X:ASP66 2.8 19.5 1.0
OG1 X:THR69 3.0 20.8 1.0
O X:GLY49 3.1 28.8 1.0
CD X:ARG68 3.4 29.2 1.0
N X:THR51 3.5 17.3 1.0
CG X:ARG68 3.5 24.8 1.0
CB X:THR51 3.5 18.1 1.0
CG X:ASP66 3.6 20.4 1.0
C X:SER50 3.6 19.1 1.0
OG X:SER60 3.7 18.4 1.0
OD1 X:ASP66 3.7 21.4 1.0
CA X:SER50 3.7 21.3 1.0
CZ X:ARG68 3.8 32.9 1.0
O X:ARG68 3.8 27.1 1.0
NH2 X:ARG68 3.9 30.8 1.0
C X:GLY49 4.1 27.7 1.0
CA X:THR51 4.1 18.4 1.0
NH2 X:ARG45 4.1 30.4 1.0
C X:ARG68 4.2 25.6 1.0
CB X:THR69 4.3 21.8 1.0
O X:SER50 4.3 21.9 1.0
NE X:ARG45 4.3 34.3 1.0
OH X:TYR53 4.3 16.5 1.0
N X:SER50 4.4 22.4 1.0
CB X:ARG68 4.5 26.9 1.0
N X:THR69 4.6 21.1 1.0
CZ X:ARG45 4.6 33.6 1.0
CB X:SER60 4.6 18.6 1.0
CA X:THR69 4.6 21.8 1.0
O X:HOH245 4.6 39.0 1.0
CG2 X:THR69 4.8 22.5 1.0
CG2 X:THR51 4.9 20.6 1.0
CA X:ARG68 4.9 23.6 1.0
CB X:SER50 4.9 21.5 1.0
CB X:ASP66 5.0 18.8 1.0
NH1 X:ARG68 5.0 38.3 1.0

Chlorine binding site 7 out of 14 in 3rt5

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Chlorine binding site 7 out of 14 in the Lysozyme in 30% Propanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Lysozyme in 30% Propanol within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Cl153

b:41.6
occ:1.00
 NE1 X:TRP63 3.1 23.1 1.0
C3 X:IPA142 3.6 25.7 1.0
CD1 X:TRP62 3.8 28.6 1.0
CE2 X:TRP63 3.9 18.6 1.0
CZ2 X:TRP63 4.1 22.8 1.0
O2 X:IPA142 4.1 24.6 1.0
CD1 X:TRP63 4.1 22.1 1.0
O X:HOH237 4.4 39.9 1.0
C2 X:IPA142 4.5 26.6 1.0
NE1 X:TRP62 4.6 32.4 1.0
CG X:TRP62 4.6 25.9 1.0
CB X:TRP62 4.9 26.0 1.0
O X:ALA107 4.9 22.2 1.0
CB X:ALA107 4.9 23.4 1.0

Chlorine binding site 8 out of 14 in 3rt5

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Chlorine binding site 8 out of 14 in the Lysozyme in 30% Propanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Lysozyme in 30% Propanol within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Cl154

b:41.0
occ:1.00
 NA X:NA132 2.5 35.8 1.0
O2 X:IPA143 2.9 35.6 1.0
O X:THR118 2.9 22.6 1.0
N X:GLY117 3.5 23.2 1.0
N X:THR118 3.7 24.6 1.0
CA X:GLY117 3.7 27.2 1.0
C X:GLY117 3.8 28.3 1.0
C X:THR118 4.0 21.9 1.0
CH3 X:ACT146 4.1 36.7 1.0
C2 X:IPA143 4.2 35.3 1.0
CG2 X:VAL120 4.2 25.5 1.0
O X:CYS115 4.4 21.1 1.0
CG1 X:VAL120 4.4 22.4 1.0
CA X:THR118 4.4 26.1 1.0
O X:GLY117 4.4 30.1 1.0
C3 X:IPA143 4.6 27.0 1.0
C X:LYS116 4.6 19.8 1.0
OD1 X:ASN27 4.7 19.0 1.0
O X:ACT146 4.7 39.6 1.0
C1 X:IPA143 4.8 32.7 1.0
N X:VAL120 4.8 26.6 1.0
C X:ACT146 4.9 39.0 1.0
O X:HOH224 4.9 29.7 1.0
CB X:VAL120 4.9 21.8 1.0

Chlorine binding site 9 out of 14 in 3rt5

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Chlorine binding site 9 out of 14 in the Lysozyme in 30% Propanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Lysozyme in 30% Propanol within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Cl155

b:57.9
occ:0.50
 O X:HOH218 2.7 39.2 1.0
CB X:ALA10 3.9 25.8 1.0
O X:ALA10 4.0 25.8 1.0
OXT X:LEU129 4.1 33.4 1.0
CA X:ALA10 4.2 23.5 1.0
C X:ALA10 4.5 23.7 1.0
C X:LEU129 4.6 38.5 1.0
CA X:LEU129 4.6 35.7 1.0
O X:ARG128 4.8 39.3 1.0
CD2 X:LEU129 4.9 29.3 1.0
CD X:LYS13 5.0 28.3 1.0

Chlorine binding site 10 out of 14 in 3rt5

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Chlorine binding site 10 out of 14 in the Lysozyme in 30% Propanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Lysozyme in 30% Propanol within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Cl156

b:24.9
occ:1.00
 OH X:TYR23 3.0 18.8 1.0
O X:HOH209 3.1 38.6 1.0
C1 X:IPA139 3.2 32.4 1.0
CZ X:TYR23 3.7 19.2 1.0
CE2 X:TYR23 3.7 19.1 1.0
CA X:GLY104 4.2 17.1 1.0
C2 X:IPA139 4.5 32.5 1.0
O X:ARG21 4.5 21.8 1.0
O2 X:IPA139 4.7 40.2 1.0
N X:GLY104 4.7 19.3 1.0
CE1 X:TYR23 4.8 18.8 1.0
CD2 X:TYR23 4.9 19.1 1.0

Reference:

P.Sharma, A.K.Solanki, Ashish. Crystal Structure of Lysozyme in 30% Propanol To Be Published.
Page generated: Sun Jul 21 03:56:35 2024

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