Atomistry » Chlorine » PDB 3rmn-3ruu » 3ru6
Atomistry »
  Chlorine »
    PDB 3rmn-3ruu »
      3ru6 »

Chlorine in PDB 3ru6: 1.8 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase (Pyrf) From Campylobacter Jejuni Subsp. Jejuni Nctc 11168

Enzymatic activity of 1.8 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase (Pyrf) From Campylobacter Jejuni Subsp. Jejuni Nctc 11168

All present enzymatic activity of 1.8 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase (Pyrf) From Campylobacter Jejuni Subsp. Jejuni Nctc 11168:
4.1.1.23;

Protein crystallography data

The structure of 1.8 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase (Pyrf) From Campylobacter Jejuni Subsp. Jejuni Nctc 11168, PDB code: 3ru6 was solved by A.S.Halavaty, G.Minasov, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.12 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 44.598, 108.308, 97.707, 90.00, 95.73, 90.00
R / Rfree (%) 16.8 / 20.3

Other elements in 3ru6:

The structure of 1.8 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase (Pyrf) From Campylobacter Jejuni Subsp. Jejuni Nctc 11168 also contains other interesting chemical elements:

Iodine (I) 26 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 1.8 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase (Pyrf) From Campylobacter Jejuni Subsp. Jejuni Nctc 11168 (pdb code 3ru6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the 1.8 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase (Pyrf) From Campylobacter Jejuni Subsp. Jejuni Nctc 11168, PDB code: 3ru6:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3ru6

Go back to Chlorine Binding Sites List in 3ru6
Chlorine binding site 1 out of 4 in the 1.8 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase (Pyrf) From Campylobacter Jejuni Subsp. Jejuni Nctc 11168


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1.8 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase (Pyrf) From Campylobacter Jejuni Subsp. Jejuni Nctc 11168 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl280

b:39.2
occ:1.00
O D:HOH352 2.5 22.5 1.0
N A:LYS91 3.2 24.5 1.0
O D:ASN123 3.4 30.0 1.0
CG A:LYS91 3.7 31.9 1.0
CB A:LYS91 3.8 27.8 1.0
CA A:GLY90 3.8 22.8 1.0
CB D:ASN123 3.9 31.6 1.0
CA D:ASN123 3.9 32.4 1.0
O D:HOH333 4.0 38.1 1.0
CB D:SER126 4.0 31.5 0.5
CB D:SER126 4.0 30.6 0.5
C A:GLY90 4.0 23.1 1.0
OG D:SER126 4.1 33.8 0.5
OD1 D:ASN123 4.1 40.0 1.0
C D:ASN123 4.1 30.2 1.0
CA A:LYS91 4.1 25.9 1.0
CG D:ASN123 4.1 35.3 1.0
CG1 D:ILE127 4.2 26.8 1.0
CD1 D:ILE127 4.3 26.9 1.0
CD A:LYS91 4.4 37.3 1.0
CD1 A:ILE142 4.4 31.0 1.0
OG D:SER126 4.5 31.0 0.5
CG2 A:ILE142 4.6 29.9 1.0

Chlorine binding site 2 out of 4 in 3ru6

Go back to Chlorine Binding Sites List in 3ru6
Chlorine binding site 2 out of 4 in the 1.8 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase (Pyrf) From Campylobacter Jejuni Subsp. Jejuni Nctc 11168


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 1.8 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase (Pyrf) From Campylobacter Jejuni Subsp. Jejuni Nctc 11168 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl280

b:36.4
occ:1.00
O B:HOH292 2.7 34.5 1.0
N C:LYS91 3.1 23.4 1.0
O B:ASN123 3.3 30.9 1.0
CB C:LYS91 3.4 26.6 1.0
CB B:ASN123 3.7 31.6 1.0
CA C:GLY90 3.9 21.5 1.0
CA B:ASN123 3.9 32.5 1.0
CB B:SER126 3.9 31.2 1.0
CA C:LYS91 3.9 25.0 1.0
OD1 B:ASN123 4.0 37.3 1.0
C B:ASN123 4.0 30.3 1.0
C C:GLY90 4.0 21.7 1.0
CG B:ASN123 4.1 34.9 1.0
CG1 B:ILE127 4.3 25.4 1.0
OG B:SER126 4.3 35.9 1.0
CD1 B:ILE127 4.4 25.5 1.0
CD1 C:ILE142 4.6 30.2 1.0
CG C:LYS91 4.7 32.1 1.0
CG2 C:ILE142 4.7 28.5 1.0
CD C:LYS91 4.8 34.6 1.0

Chlorine binding site 3 out of 4 in 3ru6

Go back to Chlorine Binding Sites List in 3ru6
Chlorine binding site 3 out of 4 in the 1.8 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase (Pyrf) From Campylobacter Jejuni Subsp. Jejuni Nctc 11168


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 1.8 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase (Pyrf) From Campylobacter Jejuni Subsp. Jejuni Nctc 11168 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl281

b:44.7
occ:1.00
O C:HOH303 2.6 31.0 1.0
OG C:SER126 3.0 38.6 1.0
N B:LYS91 3.1 24.5 1.0
O C:ASN123 3.4 30.2 1.0
CA B:GLY90 3.7 23.4 1.0
CG B:LYS91 3.7 33.1 1.0
C B:GLY90 3.9 23.7 1.0
CB B:LYS91 3.9 27.2 1.0
CB C:ASN123 3.9 31.5 1.0
CA C:ASN123 4.0 32.2 1.0
CA B:LYS91 4.1 25.8 1.0
C C:ASN123 4.1 29.7 1.0
CD1 C:ILE127 4.1 28.8 1.0
OD1 C:ASN123 4.1 36.5 1.0
CG1 C:ILE127 4.2 26.1 1.0
CB C:SER126 4.2 32.0 1.0
CG C:ASN123 4.2 34.0 1.0
CD1 B:ILE142 4.4 33.2 1.0
CD B:LYS91 4.5 38.9 1.0
NZ B:LYS91 4.6 50.6 1.0
CG2 B:ILE142 4.6 28.6 1.0
N B:GLY90 5.0 22.1 1.0

Chlorine binding site 4 out of 4 in 3ru6

Go back to Chlorine Binding Sites List in 3ru6
Chlorine binding site 4 out of 4 in the 1.8 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase (Pyrf) From Campylobacter Jejuni Subsp. Jejuni Nctc 11168


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of 1.8 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase (Pyrf) From Campylobacter Jejuni Subsp. Jejuni Nctc 11168 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl280

b:36.0
occ:0.50
NH2 D:ARG196 1.1 59.7 0.5
CZ D:ARG196 1.4 56.6 0.5
NH1 D:ARG196 1.8 53.1 0.5
NH1 D:ARG196 2.3 51.2 0.5
NE D:ARG196 2.5 57.0 0.5
NZ D:LYS225 2.6 69.8 1.0
CZ D:ARG196 3.2 52.3 0.5
CA D:ALA193 3.4 51.8 1.0
CD D:ARG196 3.6 56.2 0.5
CD D:ARG196 3.7 56.4 0.5
N D:ALA193 3.8 49.1 1.0
CB D:ALA193 3.8 54.3 1.0
NE D:ARG196 3.8 55.4 0.5
CE D:LYS225 3.9 69.1 1.0
O D:LEU192 4.0 47.8 0.5
C D:LEU192 4.0 47.5 0.5
NH2 D:ARG196 4.0 50.2 0.5
C D:LEU192 4.0 47.3 0.5
O D:LEU192 4.1 47.5 0.5
CG D:ARG196 4.1 51.8 0.5
CD D:LYS225 4.3 67.3 1.0
CB D:ARG196 4.4 51.8 0.5
O D:HOH337 4.4 16.7 1.0
CB D:ARG196 4.6 52.5 0.5
CB D:LEU192 4.6 46.3 0.5
C D:ALA193 4.7 50.9 1.0
CG D:ARG196 4.7 54.7 0.5
CG D:LEU192 4.8 47.6 0.5
CB D:LEU192 4.8 46.4 0.5
O D:ALA193 4.9 51.3 1.0

Reference:

A.S.Halavaty, G.Minasov, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.8 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase (Pyrf) From Campylobacter Jejuni Subsp. Jejuni Nctc 11168 To Be Published.
Page generated: Sun Jul 21 03:57:44 2024

Last articles

As in 3HBZ
As in 3HTW
As in 3GWS
As in 3H6T
As in 3H6N
As in 3GSK
As in 3G3S
As in 3GH3
As in 3GK2
As in 3GK1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy