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Chlorine in PDB 3rw8: Crystal Structure of Lysozyme in 40% Ethanol

Enzymatic activity of Crystal Structure of Lysozyme in 40% Ethanol

All present enzymatic activity of Crystal Structure of Lysozyme in 40% Ethanol:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Lysozyme in 40% Ethanol, PDB code: 3rw8 was solved by P.Sharma, A.K.Solanki, Ashish, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.98 / 1.85
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.216, 78.216, 36.886, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 22.7

Other elements in 3rw8:

The structure of Crystal Structure of Lysozyme in 40% Ethanol also contains other interesting chemical elements:

Sodium (Na) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Lysozyme in 40% Ethanol (pdb code 3rw8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the Crystal Structure of Lysozyme in 40% Ethanol, PDB code: 3rw8:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Chlorine binding site 1 out of 9 in 3rw8

Go back to Chlorine Binding Sites List in 3rw8
Chlorine binding site 1 out of 9 in the Crystal Structure of Lysozyme in 40% Ethanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Lysozyme in 40% Ethanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl144

b:35.3
occ:1.00
 OG A:SER24 3.1 27.3 1.0
N A:GLY26 3.2 22.6 1.0
CA A:GLY26 3.5 21.9 1.0
CB A:SER24 3.5 31.4 1.0
CA A:GLN121 3.6 28.7 1.0
N A:GLN121 3.9 28.5 1.0
CD1 A:ILE124 3.9 33.2 1.0
CB A:GLN121 4.1 30.9 1.0
CG2 A:VAL120 4.2 26.5 1.0
C A:VAL120 4.2 27.4 1.0
O A:VAL120 4.3 25.7 1.0
N A:LEU25 4.3 27.9 1.0
CG1 A:ILE124 4.4 27.6 1.0
C A:SER24 4.4 28.4 1.0
C A:LEU25 4.4 25.7 1.0
C A:GLY26 4.5 24.1 1.0
CG A:GLN121 4.5 39.3 1.0
CA A:SER24 4.6 26.3 1.0
N A:ASN27 4.7 23.8 1.0
C A:GLN121 4.7 26.2 1.0
CA A:LEU25 4.8 25.8 1.0
O A:SER24 4.9 26.4 1.0
O A:GLN121 4.9 25.8 1.0
O A:HOH195 5.0 33.3 1.0

Chlorine binding site 2 out of 9 in 3rw8

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Chlorine binding site 2 out of 9 in the Crystal Structure of Lysozyme in 40% Ethanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Lysozyme in 40% Ethanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl145

b:29.0
occ:1.00
 O A:HOH163 2.9 24.4 1.0
O A:HOH180 3.0 34.2 1.0
N A:THR69 3.2 21.9 1.0
O A:THR69 3.2 23.9 1.0
OG A:SER72 3.6 27.6 1.0
CA A:GLY67 3.6 26.2 1.0
ND2 A:ASN65 3.6 21.0 1.0
N A:ARG68 3.6 23.2 1.0
C A:THR69 3.6 25.5 1.0
C A:GLY67 3.6 27.9 1.0
N A:GLY67 3.7 24.8 1.0
CA A:THR69 3.8 24.5 1.0
O A:HOH215 4.1 26.9 1.0
CB A:THR69 4.1 26.4 1.0
C A:ARG68 4.3 27.7 1.0
O A:GLY67 4.3 26.5 1.0
OD1 A:ASP66 4.3 23.4 1.0
CA A:ARG68 4.4 26.0 1.0
N A:PRO70 4.5 26.2 1.0
NA A:NA154 4.6 30.4 1.0
O A:HOH162 4.7 27.4 0.5
C A:ASP66 4.8 24.1 1.0
OG1 A:THR69 4.8 21.0 1.0
CG A:ASN65 4.9 22.6 1.0
CB A:SER72 4.9 28.0 1.0
N A:ASP66 5.0 21.1 1.0
CA A:PRO70 5.0 27.6 1.0

Chlorine binding site 3 out of 9 in 3rw8

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Chlorine binding site 3 out of 9 in the Crystal Structure of Lysozyme in 40% Ethanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Lysozyme in 40% Ethanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl146

b:35.7
occ:1.00
 OG1 A:THR51 2.5 20.3 1.0
OD2 A:ASP66 2.8 21.9 1.0
NE A:ARG68 2.8 33.2 1.0
O A:GLY49 3.0 28.5 1.0
OG1 A:THR69 3.1 21.0 1.0
N A:THR51 3.3 20.7 1.0
CB A:THR51 3.3 18.9 1.0
C A:SER50 3.4 21.7 1.0
CD A:ARG68 3.5 30.8 1.0
CG A:ARG68 3.6 26.0 1.0
CA A:SER50 3.7 25.8 1.0
CG A:ASP66 3.7 22.1 1.0
CZ A:ARG68 3.7 37.8 1.0
OG A:SER60 3.8 20.6 1.0
NH2 A:ARG68 3.8 31.2 1.0
CA A:THR51 3.9 20.6 1.0
OD1 A:ASP66 3.9 23.4 1.0
O A:ARG68 4.0 28.5 1.0
C A:GLY49 4.0 28.4 1.0
O A:SER50 4.0 22.5 1.0
NE A:ARG45 4.1 30.4 1.0
NH2 A:ARG45 4.2 28.0 1.0
OH A:TYR53 4.3 18.8 1.0
N A:SER50 4.3 24.5 1.0
C A:ARG68 4.4 27.7 1.0
CB A:THR69 4.4 26.4 1.0
CZ A:ARG45 4.5 30.2 1.0
CG2 A:THR51 4.7 21.9 1.0
CB A:ARG68 4.7 28.3 1.0
CB A:SER60 4.8 21.3 1.0
N A:THR69 4.8 21.9 1.0
CA A:THR69 4.8 24.5 1.0
CB A:SER50 4.9 20.8 1.0
CB A:ASP66 5.0 21.0 1.0
NH1 A:ARG68 5.0 38.0 1.0

Chlorine binding site 4 out of 9 in 3rw8

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Chlorine binding site 4 out of 9 in the Crystal Structure of Lysozyme in 40% Ethanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Lysozyme in 40% Ethanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl147

b:37.7
occ:1.00
 CE2 A:PHE38 3.6 28.7 1.0
NZ A:LYS33 3.9 29.8 1.0
CZ3 A:TRP123 4.0 29.1 1.0
CE A:LYS33 4.1 29.9 1.0
CB A:ARG5 4.2 23.4 1.0
CD A:ARG5 4.2 27.6 1.0
CD A:LYS33 4.3 24.8 1.0
CZ A:PHE38 4.4 22.2 1.0
CD2 A:PHE38 4.5 24.6 1.0
CG A:ARG5 4.6 23.0 1.0
NE A:ARG5 4.7 33.8 1.0
CE3 A:TRP123 4.8 24.2 1.0
CH2 A:TRP123 4.8 27.0 1.0

Chlorine binding site 5 out of 9 in 3rw8

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Chlorine binding site 5 out of 9 in the Crystal Structure of Lysozyme in 40% Ethanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Lysozyme in 40% Ethanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl148

b:49.3
occ:1.00
 N A:ASN74 3.0 27.0 1.0
NE A:ARG73 3.6 34.4 1.0
C A:ASN74 3.7 27.4 1.0
O A:ASN74 3.7 27.4 1.0
CA A:ASN74 3.8 27.5 1.0
CB A:ARG73 3.9 29.6 1.0
C A:ARG73 3.9 29.4 1.0
CA A:ARG73 3.9 27.5 1.0
CD2 A:LEU75 4.1 30.9 1.0
CB A:ASN74 4.2 27.1 1.0
N A:LEU75 4.2 24.0 1.0
NH2 A:ARG73 4.2 36.9 1.0
CD A:ARG73 4.4 33.3 1.0
CZ A:ARG73 4.4 31.9 1.0
CA A:LEU75 4.6 26.4 1.0
CG A:LEU75 4.7 30.3 1.0
CG A:ARG73 4.8 31.6 1.0
O A:HOH226 4.9 35.9 1.0

Chlorine binding site 6 out of 9 in 3rw8

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Chlorine binding site 6 out of 9 in the Crystal Structure of Lysozyme in 40% Ethanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Lysozyme in 40% Ethanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl149

b:40.0
occ:1.00
 N A:LYS1 2.6 24.4 1.0
OD1 A:ASN39 2.9 22.5 1.0
NE2 A:GLN41 3.0 24.7 1.0
CA A:LYS1 3.4 24.4 1.0
CG A:GLN41 3.4 23.4 1.0
C A:LYS1 3.5 25.3 1.0
CD A:GLN41 3.7 23.0 1.0
CG A:ASN39 3.8 20.7 1.0
O A:LYS1 3.9 24.1 1.0
CB A:GLN41 3.9 23.3 1.0
N A:VAL2 4.0 23.9 1.0
ND2 A:ASN39 4.2 27.2 1.0
CG2 A:VAL2 4.2 28.1 1.0
N A:GLN41 4.4 22.4 1.0
OG1 A:THR40 4.5 23.8 1.0
O A:HOH167 4.6 31.3 1.0
CA A:GLN41 4.8 23.3 1.0
CB A:LYS1 4.8 23.6 1.0
N A:THR40 4.9 19.7 1.0
OE1 A:GLN41 4.9 20.7 1.0
CA A:VAL2 4.9 22.6 1.0

Chlorine binding site 7 out of 9 in 3rw8

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Chlorine binding site 7 out of 9 in the Crystal Structure of Lysozyme in 40% Ethanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Lysozyme in 40% Ethanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl150

b:30.8
occ:1.00
 OH A:TYR23 3.0 24.2 1.0
CZ A:TYR23 3.7 23.9 1.0
CE2 A:TYR23 3.7 24.3 1.0
CA A:GLY104 4.2 27.9 1.0
O A:ARG21 4.7 28.7 1.0
N A:GLY104 4.7 26.2 1.0
CE1 A:TYR23 4.8 22.6 1.0
CD2 A:TYR23 5.0 25.0 1.0

Chlorine binding site 8 out of 9 in 3rw8

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Chlorine binding site 8 out of 9 in the Crystal Structure of Lysozyme in 40% Ethanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Lysozyme in 40% Ethanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl151

b:47.9
occ:0.50
 OG1 A:THR43 2.9 24.9 1.0
CB A:THR43 3.6 23.2 1.0
C A:THR43 4.1 26.1 1.0
NH2 A:ARG45 4.2 28.0 1.0
N A:ASN44 4.3 21.5 1.0
O A:THR43 4.3 25.5 1.0
CG2 A:THR51 4.3 21.9 1.0
N A:ARG45 4.4 26.8 1.0
CA A:ASN44 4.5 25.3 1.0
O A:HOH209 4.5 31.5 1.0
CA A:THR43 4.6 21.4 1.0
C A:ASN44 4.6 24.1 1.0
CG2 A:THR43 4.7 22.8 1.0
CZ A:ARG45 4.7 30.2 1.0
CB A:ARG45 4.8 26.9 1.0

Chlorine binding site 9 out of 9 in 3rw8

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Chlorine binding site 9 out of 9 in the Crystal Structure of Lysozyme in 40% Ethanol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Lysozyme in 40% Ethanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl152

b:34.3
occ:1.00
 O A:TYR53 2.8 18.9 1.0
N A:LEU56 2.9 20.3 1.0
OG A:SER91 3.1 22.1 1.0
C A:GLY54 3.4 22.2 1.0
N A:ILE55 3.4 23.3 1.0
N A:GLN57 3.4 21.1 1.0
CA A:GLY54 3.5 21.3 1.0
CA A:LEU56 3.5 22.0 1.0
C A:LEU56 3.6 22.9 1.0
CB A:SER91 3.6 20.1 1.0
CB A:LEU56 3.8 21.3 1.0
CG1 A:ILE58 3.8 22.0 1.0
C A:TYR53 3.8 20.1 1.0
CD1 A:ILE58 3.8 23.1 1.0
O A:GLY54 3.9 21.2 1.0
N A:ILE58 3.9 19.2 1.0
C A:ILE55 4.0 22.6 1.0
CG1 A:ILE55 4.0 27.3 1.0
N A:GLY54 4.1 21.2 1.0
CA A:ILE55 4.2 22.6 1.0
O A:LEU83 4.2 26.0 1.0
O A:HOH164 4.2 26.5 1.0
CB A:ILE58 4.3 22.8 1.0
CA A:GLN57 4.4 20.2 1.0
O A:LEU56 4.4 21.7 1.0
CD2 A:LEU83 4.5 26.4 1.0
CB A:LEU83 4.5 23.2 1.0
CA A:SER91 4.6 21.9 1.0
C A:GLN57 4.7 19.8 1.0
CB A:ILE55 4.8 25.7 1.0
CA A:ILE58 4.8 23.4 1.0
CG A:LEU56 4.8 22.7 1.0
CG A:LEU83 4.9 27.3 1.0

Reference:

P.Sharma, A.K.Solanki, Ashish. Crystal Structure of Lysozyme in 40% Ethanol To Be Published.
Page generated: Sun Jul 21 04:01:40 2024

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