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Chlorine in PDB 3s3w: Structure of Chicken Acid-Sensing Ion Channel 1 at 2.6 A Resolution and pH 7.5

Protein crystallography data

The structure of Structure of Chicken Acid-Sensing Ion Channel 1 at 2.6 A Resolution and pH 7.5, PDB code: 3s3w was solved by R.J.P.Dawson, J.Benz, P.Stohler, T.Tetaz, C.Joseph, S.Huber, G.Schmid, D.Huegin, P.Pflimlin, G.Trube, M.G.Rudolph, M.Hennig, A.Ruf, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.94 / 2.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 110.469, 142.689, 159.736, 90.00, 90.00, 90.00
R / Rfree (%) 21.2 / 23.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Chicken Acid-Sensing Ion Channel 1 at 2.6 A Resolution and pH 7.5 (pdb code 3s3w). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structure of Chicken Acid-Sensing Ion Channel 1 at 2.6 A Resolution and pH 7.5, PDB code: 3s3w:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 3s3w

Go back to Chlorine Binding Sites List in 3s3w
Chlorine binding site 1 out of 3 in the Structure of Chicken Acid-Sensing Ion Channel 1 at 2.6 A Resolution and pH 7.5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Chicken Acid-Sensing Ion Channel 1 at 2.6 A Resolution and pH 7.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl464

b:59.8
occ:1.00
OE2 A:GLU314 3.0 50.9 1.0
NE A:ARG310 3.3 47.4 1.0
NZ C:LYS212 3.4 40.2 1.0
NH1 A:ARG310 3.4 36.2 1.0
CG A:GLU314 3.7 41.8 1.0
CD A:GLU314 3.8 56.7 1.0
CZ A:ARG310 3.8 46.5 1.0
CB A:CYS360 3.9 46.4 1.0
CD C:LYS212 3.9 42.2 1.0
O A:LEU352 4.1 47.4 1.0
CE C:LYS212 4.2 40.8 1.0
CB A:LEU352 4.2 46.4 1.0
CB A:ARG310 4.2 36.0 1.0
CG1 A:VAL353 4.2 37.8 1.0
C A:LEU352 4.3 53.3 1.0
CG A:ARG310 4.4 37.1 1.0
CD A:ARG310 4.5 38.6 1.0
SG A:CYS360 4.5 0.6 1.0
O A:CYS360 4.6 82.7 1.0
N A:VAL353 4.6 27.6 1.0
CA A:VAL353 4.7 39.5 1.0
O A:ARG310 4.8 44.7 1.0
CA A:ARG310 4.8 48.8 1.0
CA A:LEU352 4.9 42.3 1.0
OE1 A:GLU314 5.0 38.6 1.0

Chlorine binding site 2 out of 3 in 3s3w

Go back to Chlorine Binding Sites List in 3s3w
Chlorine binding site 2 out of 3 in the Structure of Chicken Acid-Sensing Ion Channel 1 at 2.6 A Resolution and pH 7.5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Chicken Acid-Sensing Ion Channel 1 at 2.6 A Resolution and pH 7.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl464

b:51.2
occ:1.00
OE2 B:GLU314 2.9 50.3 1.0
NE B:ARG310 3.2 36.8 1.0
NZ A:LYS212 3.3 36.3 1.0
NH1 B:ARG310 3.4 34.4 1.0
CG B:GLU314 3.7 35.8 1.0
CZ B:ARG310 3.7 41.0 1.0
CD B:GLU314 3.8 54.2 1.0
CD A:LYS212 3.9 43.2 1.0
CB B:CYS360 3.9 37.9 1.0
CB B:ARG310 4.1 23.7 1.0
CE A:LYS212 4.1 37.5 1.0
O B:LEU352 4.2 49.8 1.0
CG B:ARG310 4.3 40.7 1.0
CG1 B:VAL353 4.3 30.9 1.0
CD B:ARG310 4.3 36.5 1.0
CB B:LEU352 4.4 40.7 1.0
C B:LEU352 4.4 53.1 1.0
O B:CYS360 4.6 77.1 1.0
SG B:CYS360 4.6 92.1 1.0
N B:VAL353 4.7 30.0 1.0
CA B:ARG310 4.7 49.2 1.0
O B:ARG310 4.8 40.0 1.0
CA B:VAL353 4.8 35.1 1.0
OE1 B:GLU314 5.0 48.3 1.0

Chlorine binding site 3 out of 3 in 3s3w

Go back to Chlorine Binding Sites List in 3s3w
Chlorine binding site 3 out of 3 in the Structure of Chicken Acid-Sensing Ion Channel 1 at 2.6 A Resolution and pH 7.5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Chicken Acid-Sensing Ion Channel 1 at 2.6 A Resolution and pH 7.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl464

b:55.1
occ:1.00
OE2 C:GLU314 3.0 53.1 1.0
NZ B:LYS212 3.3 38.4 1.0
NE C:ARG310 3.4 40.0 1.0
NH1 C:ARG310 3.5 40.5 1.0
CG C:GLU314 3.6 36.0 1.0
CB C:CYS360 3.8 48.4 1.0
CD C:GLU314 3.8 50.4 1.0
CD B:LYS212 3.9 41.4 1.0
CZ C:ARG310 3.9 41.8 1.0
O C:LEU352 4.1 57.8 1.0
CE B:LYS212 4.1 43.4 1.0
CB C:LEU352 4.2 47.2 1.0
CB C:ARG310 4.2 34.5 1.0
C C:LEU352 4.3 52.1 1.0
CG1 C:VAL353 4.3 35.6 1.0
CG C:ARG310 4.4 28.1 1.0
SG C:CYS360 4.4 94.9 1.0
CD C:ARG310 4.5 42.2 1.0
O C:CYS360 4.5 88.7 1.0
N C:VAL353 4.7 39.2 1.0
CA C:VAL353 4.7 47.7 1.0
O C:ARG310 4.8 41.2 1.0
CA C:ARG310 4.8 46.0 1.0
CA C:LEU352 4.9 38.8 1.0
OE1 C:GLU314 5.0 38.4 1.0

Reference:

R.J.Dawson, J.Benz, P.Stohler, T.Tetaz, C.Joseph, S.Huber, G.Schmid, D.Hugin, P.Pflimlin, G.Trube, M.G.Rudolph, M.Hennig, A.Ruf. Structure of the Acid-Sensing Ion Channel 1 in Complex with the Gating Modifier Psalmotoxin 1. Nat Commun V. 3 936 2012.
ISSN: ESSN 2041-1723
PubMed: 22760635
DOI: 10.1038/NCOMMS1917
Page generated: Sat Dec 12 10:08:28 2020

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