Atomistry » Chlorine » PDB 3rut-3s81 » 3s7b
Atomistry »
  Chlorine »
    PDB 3rut-3s81 »
      3s7b »

Chlorine in PDB 3s7b: Structural Basis of Substrate Methylation and Inhibition of SMYD2

Enzymatic activity of Structural Basis of Substrate Methylation and Inhibition of SMYD2

All present enzymatic activity of Structural Basis of Substrate Methylation and Inhibition of SMYD2:
2.1.1.43;

Protein crystallography data

The structure of Structural Basis of Substrate Methylation and Inhibition of SMYD2, PDB code: 3s7b was solved by A.D.Ferguson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.10 / 2.42
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 155.860, 155.860, 52.830, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 19.8

Other elements in 3s7b:

The structure of Structural Basis of Substrate Methylation and Inhibition of SMYD2 also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structural Basis of Substrate Methylation and Inhibition of SMYD2 (pdb code 3s7b). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structural Basis of Substrate Methylation and Inhibition of SMYD2, PDB code: 3s7b:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3s7b

Go back to Chlorine Binding Sites List in 3s7b
Chlorine binding site 1 out of 2 in the Structural Basis of Substrate Methylation and Inhibition of SMYD2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structural Basis of Substrate Methylation and Inhibition of SMYD2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl439

b:80.4
occ:1.00
CL38 A:NH5439 0.0 80.4 1.0
C4 A:NH5439 1.7 74.2 1.0
C5 A:NH5439 2.7 70.6 1.0
C3 A:NH5439 2.8 71.1 1.0
CL39 A:NH5439 3.2 71.9 1.0
CG1 A:ILE149 3.7 48.9 1.0
O A:HOH490 3.9 48.2 1.0
O A:LYS145 3.9 57.3 1.0
C6 A:NH5439 4.0 68.4 1.0
C2 A:NH5439 4.0 68.1 1.0
ND2 A:ASN180 4.0 60.7 1.0
CG A:LYS145 4.1 67.2 1.0
CD1 A:ILE149 4.1 48.7 1.0
CB A:LYS145 4.2 57.9 1.0
CG A:ASN180 4.2 68.4 1.0
CB A:LEU148 4.4 54.5 1.0
CA A:LYS145 4.4 56.6 1.0
OD1 A:ASN180 4.5 64.4 1.0
C1 A:NH5439 4.5 67.7 1.0
C A:LYS145 4.6 59.4 1.0
N A:ILE149 4.7 49.5 1.0
CD A:LYS145 4.8 78.7 1.0
CD1 A:LEU148 4.8 61.5 1.0
CB A:ASN180 5.0 35.0 1.0

Chlorine binding site 2 out of 2 in 3s7b

Go back to Chlorine Binding Sites List in 3s7b
Chlorine binding site 2 out of 2 in the Structural Basis of Substrate Methylation and Inhibition of SMYD2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structural Basis of Substrate Methylation and Inhibition of SMYD2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl439

b:71.9
occ:1.00
CL39 A:NH5439 0.0 71.9 1.0
C3 A:NH5439 1.7 71.1 1.0
C2 A:NH5439 2.7 68.1 1.0
C4 A:NH5439 2.7 74.2 1.0
CL38 A:NH5439 3.2 80.4 1.0
O A:HOH527 3.4 40.2 1.0
CD1 A:ILE149 3.7 48.7 1.0
CD1 A:LEU141 3.9 58.7 1.0
CA A:ALA177 3.9 36.1 1.0
CB A:ASN180 4.0 35.0 1.0
C1 A:NH5439 4.0 67.7 1.0
C5 A:NH5439 4.0 70.6 1.0
CB A:ALA177 4.1 38.1 1.0
ND2 A:ASN180 4.1 60.7 1.0
CG A:ASN180 4.2 68.4 1.0
CG1 A:ILE149 4.4 48.9 1.0
CD A:LYS145 4.5 78.7 1.0
O A:ALA177 4.5 37.1 1.0
C6 A:NH5439 4.5 68.4 1.0
CG A:LEU141 4.7 60.1 1.0
CZ A:PHE259 4.7 45.2 1.0
C A:ALA177 4.7 37.5 1.0
N A:ALA177 4.7 37.0 1.0
CG A:LYS145 4.8 67.2 1.0
CB A:LYS145 4.8 57.9 1.0
CE2 A:PHE259 4.9 45.9 1.0
O A:PHE176 4.9 39.0 1.0

Reference:

A.D.Ferguson, N.A.Larsen, T.Howard, H.Pollard, I.Green, C.Grande, T.Cheung, R.Garcia-Arenas, S.Cowen, J.Wu, R.Godin, H.Chen, N.Keen. Structural Basis of Substrate Methylation and Inhibition of SMYD2. Structure V. 19 1262 2011.
ISSN: ISSN 0969-2126
PubMed: 21782458
DOI: 10.1016/J.STR.2011.06.011
Page generated: Sat Dec 12 10:08:41 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy