Chlorine in PDB 3s7x: Unassembled Washington University Polyomavirus VP1 Pentamer R198K Mutant

The structure of Unassembled Washington University Polyomavirus VP1 Pentamer R198K Mutant, PDB code: 3s7x was solved by U.Neu, J.Wang, T.Stehle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.36 / 2.90
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	166.200, 166.200, 127.570, 90.00, 90.00, 90.00
R / Rfree (%)	23.4 / 25.3

The structure of Unassembled Washington University Polyomavirus VP1 Pentamer R198K Mutant also contains other interesting chemical elements:

Sodium

(Na)

5 atoms

The binding sites of Chlorine atom in the Unassembled Washington University Polyomavirus VP1 Pentamer R198K Mutant (pdb code 3s7x). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Unassembled Washington University Polyomavirus VP1 Pentamer R198K Mutant, PDB code: 3s7x:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Unassembled Washington University Polyomavirus VP1 Pentamer R198K Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Unassembled Washington University Polyomavirus VP1 Pentamer R198K Mutant within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl297 b:78.2 occ:1.00 NZ B:LYS57 3.3 54.5 1.0 OG C:SER193 3.6 72.0 1.0 N C:SER193 4.3 68.4 1.0 CB C:SER193 4.4 70.2 1.0 CE B:LYS57 4.7 53.7 1.0

Chlorine binding site 2 out of 5 in the Unassembled Washington University Polyomavirus VP1 Pentamer R198K Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Unassembled Washington University Polyomavirus VP1 Pentamer R198K Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl297 b:84.7 occ:1.00 NZ E:LYS57 2.9 54.4 1.0 OG A:SER193 3.0 72.0 1.0 N A:SER193 3.7 68.3 1.0 CB A:SER193 3.9 70.2 1.0 CE E:LYS57 4.2 53.8 1.0 CA A:SER193 4.5 69.4 1.0 CA A:SER192 4.5 65.5 1.0 C A:SER192 4.7 66.5 1.0 OG A:SER192 4.7 68.5 1.0

Chlorine binding site 3 out of 5 in the Unassembled Washington University Polyomavirus VP1 Pentamer R198K Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Unassembled Washington University Polyomavirus VP1 Pentamer R198K Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl298 b:76.5 occ:1.00 NZ A:LYS57 2.8 54.6 1.0 OG B:SER193 3.7 72.0 1.0 CE A:LYS57 4.2 53.7 1.0 N B:SER193 4.6 68.3 1.0 CB B:SER193 4.7 70.2 1.0

Chlorine binding site 4 out of 5 in the Unassembled Washington University Polyomavirus VP1 Pentamer R198K Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Unassembled Washington University Polyomavirus VP1 Pentamer R198K Mutant within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl297 b:76.0 occ:1.00 N D:SER193 3.7 68.3 1.0 OG D:SER193 3.7 72.0 1.0 OG D:SER192 3.7 68.5 1.0 NZ C:LYS57 3.8 54.5 1.0 OG D:SER194 3.9 70.5 1.0 CB D:SER193 4.2 70.2 1.0 CA D:SER192 4.3 65.5 1.0 N D:SER194 4.4 70.4 1.0 C D:SER192 4.4 66.5 1.0 CA D:SER193 4.5 69.4 1.0 CB D:SER192 4.5 66.9 1.0

Chlorine binding site 5 out of 5 in the Unassembled Washington University Polyomavirus VP1 Pentamer R198K Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Unassembled Washington University Polyomavirus VP1 Pentamer R198K Mutant within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl298 b:80.9 occ:1.00 OG E:SER193 2.7 72.0 1.0 NZ D:LYS57 3.2 54.5 1.0 N E:SER193 3.6 68.3 1.0 CB E:SER193 3.6 70.2 1.0 CA E:SER193 4.2 69.4 1.0 CE D:LYS57 4.4 53.7 1.0 CA E:SER192 4.6 65.5 1.0 C E:SER192 4.6 66.5 1.0 OG E:SER192 4.8 68.4 1.0 N E:SER194 4.9 70.4 1.0

U.Neu, J.Wang, D.Macejak, R.L.Garcea, T.Stehle. Structures of the Major Capsid Proteins of the Human Ki and Wu Polyomaviruses. J.Virol. V. 85 7384 2011.
ISSN: ISSN 0022-538X
PubMed: 21543504
DOI: 10.1128/JVI.00382-11