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Chlorine in PDB 3sbo: Structure of E.Coli Gdh From Native Source

Enzymatic activity of Structure of E.Coli Gdh From Native Source

All present enzymatic activity of Structure of E.Coli Gdh From Native Source:
1.4.1.4;

Protein crystallography data

The structure of Structure of E.Coli Gdh From Native Source, PDB code: 3sbo was solved by C.L.Gee, C.Zubieta, N.Echols, M.Totir, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.97 / 3.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 101.922, 151.617, 169.970, 90.00, 90.00, 90.00
R / Rfree (%) 22.9 / 26.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of E.Coli Gdh From Native Source (pdb code 3sbo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Structure of E.Coli Gdh From Native Source, PDB code: 3sbo:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 3sbo

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Chlorine binding site 1 out of 8 in the Structure of E.Coli Gdh From Native Source


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of E.Coli Gdh From Native Source within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl448

b:41.3
occ:1.00
 N A:GLY167 3.6 52.9 1.0
CA A:GLY196 3.8 48.9 1.0
CA A:GLY167 3.9 52.7 1.0
O A:GLY167 3.9 52.9 1.0
NH1 A:ARG207 4.1 66.6 1.0
C A:GLY167 4.2 52.4 1.0
CB A:ALA166 4.6 56.0 1.0
N A:GLY196 4.6 46.0 1.0
C A:ALA166 4.8 53.8 1.0
O A:GLY196 4.8 51.2 1.0
C A:GLY196 4.8 50.3 1.0
O A:THR195 4.9 46.4 1.0
CG2 A:VAL176 5.0 35.1 1.0

Chlorine binding site 2 out of 8 in 3sbo

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Chlorine binding site 2 out of 8 in the Structure of E.Coli Gdh From Native Source


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of E.Coli Gdh From Native Source within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl448

b:52.4
occ:1.00
 ND2 C:ASN77 3.7 60.9 1.0
NZ C:LYS138 3.8 36.4 1.0
OD1 C:ASN77 3.9 59.5 1.0
N C:ASP134 4.0 43.0 1.0
CZ2 C:TRP67 4.0 48.1 1.0
CD1 C:PHE133 4.1 45.9 1.0
CE C:LYS138 4.1 36.7 1.0
CG C:ASN77 4.3 58.3 1.0
O A:HOH453 4.4 53.6 1.0
CA C:PHE133 4.4 43.5 1.0
CE1 C:PHE133 4.5 47.1 1.0
CH2 C:TRP67 4.7 48.9 1.0
CB C:ASP134 4.7 40.4 1.0
C C:PHE133 4.7 44.4 1.0
CG C:PHE133 4.8 45.0 1.0
CA C:ASP134 4.9 41.1 1.0
O C:ASP134 4.9 42.3 1.0

Chlorine binding site 3 out of 8 in 3sbo

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Chlorine binding site 3 out of 8 in the Structure of E.Coli Gdh From Native Source


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of E.Coli Gdh From Native Source within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl449

b:48.1
occ:1.00
 N C:GLY167 3.5 45.7 1.0
CA C:GLY196 3.7 59.8 1.0
CA C:GLY167 3.8 46.6 1.0
O C:GLY167 3.8 47.6 1.0
C C:GLY167 4.2 48.1 1.0
O C:THR195 4.2 44.6 1.0
N C:GLY196 4.4 62.8 1.0
NH1 C:ARG207 4.6 77.5 1.0
CB C:ALA166 4.6 46.3 1.0
O C:GLY196 4.6 57.5 1.0
C C:THR195 4.6 42.9 1.0
C C:ALA166 4.6 43.8 1.0
C C:GLY196 4.6 57.8 1.0
CG2 C:VAL176 4.8 38.9 1.0
CA C:ALA166 4.9 45.1 1.0

Chlorine binding site 4 out of 8 in 3sbo

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Chlorine binding site 4 out of 8 in the Structure of E.Coli Gdh From Native Source


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of E.Coli Gdh From Native Source within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl448

b:37.7
occ:1.00
 NZ D:LYS138 3.3 58.3 1.0
N D:ASP134 3.4 52.0 1.0
CB D:ASP134 3.9 55.7 1.0
ND2 D:ASN77 4.0 56.4 1.0
O D:ASP134 4.1 58.2 1.0
CA D:ASP134 4.1 54.3 1.0
CD1 D:PHE133 4.2 47.6 1.0
CA D:PHE133 4.2 47.6 1.0
C D:PHE133 4.3 49.9 1.0
OD1 D:ASN77 4.6 54.7 1.0
CE D:LYS138 4.6 58.5 1.0
C D:ASP134 4.6 55.9 1.0
CE1 D:PHE133 4.7 47.6 1.0
CZ2 D:TRP67 4.7 34.7 1.0
CG D:ASN77 4.7 55.1 1.0
O D:ASP132 4.7 45.1 1.0
CG D:PHE133 4.8 48.3 1.0
CB D:PHE133 5.0 48.2 1.0

Chlorine binding site 5 out of 8 in 3sbo

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Chlorine binding site 5 out of 8 in the Structure of E.Coli Gdh From Native Source


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of E.Coli Gdh From Native Source within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl449

b:70.3
occ:1.00
 N D:ASP161 3.0 37.7 1.0
CB D:ASP161 3.5 38.5 1.0
OG1 D:THR162 3.5 37.1 1.0
N D:ALA160 3.6 42.9 1.0
CA D:ASP161 3.6 39.2 1.0
OD2 D:ASP161 3.6 39.8 1.0
N D:THR162 3.9 43.3 1.0
C D:ASP161 3.9 41.5 1.0
C D:GLY159 4.0 44.4 1.0
CG D:ASP161 4.1 39.7 1.0
C D:ALA160 4.1 37.1 1.0
CA D:GLY159 4.1 44.2 1.0
ND2 A:ASN189 4.2 36.1 1.0
CA D:ALA160 4.3 38.7 1.0
OD1 A:ASN189 4.5 35.3 1.0
CB D:THR162 4.5 39.3 1.0
CG A:ASN189 4.6 35.5 1.0
CB D:ALA160 4.6 36.6 1.0
O D:ASP161 4.7 40.1 1.0
CA D:THR162 4.8 42.0 1.0
O D:GLY159 4.8 44.3 1.0

Chlorine binding site 6 out of 8 in 3sbo

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Chlorine binding site 6 out of 8 in the Structure of E.Coli Gdh From Native Source


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Structure of E.Coli Gdh From Native Source within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl448

b:42.9
occ:1.00
 N E:ASP134 3.6 51.3 1.0
NZ E:LYS138 3.7 61.5 1.0
ND2 E:ASN77 3.9 53.0 1.0
CE E:LYS138 3.9 60.6 1.0
CD1 E:PHE133 4.1 44.5 1.0
OD1 E:ASN77 4.2 50.8 1.0
O E:ASP134 4.3 50.4 1.0
CZ2 E:TRP67 4.3 49.3 1.0
CA E:PHE133 4.3 46.8 1.0
CB E:ASP134 4.3 54.1 1.0
CA E:ASP134 4.4 52.7 1.0
CG E:ASN77 4.5 50.6 1.0
C E:PHE133 4.5 48.7 1.0
CE1 E:PHE133 4.5 44.5 1.0
O E:ASP132 4.7 47.4 1.0
CG E:PHE133 4.7 45.9 1.0
C E:ASP134 4.8 51.3 1.0
CH2 E:TRP67 4.9 49.7 1.0
CB E:PHE133 5.0 46.3 1.0

Chlorine binding site 7 out of 8 in 3sbo

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Chlorine binding site 7 out of 8 in the Structure of E.Coli Gdh From Native Source


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Structure of E.Coli Gdh From Native Source within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl449

b:48.7
occ:1.00
 N E:GLY167 3.2 60.5 1.0
CA E:GLY167 3.5 60.6 1.0
CA E:GLY196 3.7 45.6 1.0
O E:THR195 4.0 44.0 1.0
C E:GLY167 4.1 60.5 1.0
O E:GLY167 4.2 60.7 1.0
NH2 E:ARG207 4.2 86.9 1.0
CB E:ALA166 4.3 58.6 1.0
C E:ALA166 4.3 59.2 1.0
N E:GLY196 4.5 44.9 1.0
NE E:ARG207 4.5 83.4 1.0
C E:THR195 4.5 43.6 1.0
O E:GLY196 4.7 44.1 1.0
C E:GLY196 4.7 44.5 1.0
CA E:ALA166 4.8 56.6 1.0
CZ E:ARG207 4.9 86.3 1.0

Chlorine binding site 8 out of 8 in 3sbo

Go back to Chlorine Binding Sites List in 3sbo
Chlorine binding site 8 out of 8 in the Structure of E.Coli Gdh From Native Source


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Structure of E.Coli Gdh From Native Source within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl448

b:45.1
occ:1.00
 N F:ASP134 3.4 50.8 1.0
NZ F:LYS138 3.7 69.9 1.0
ND2 F:ASN77 3.9 62.9 1.0
CB F:ASP134 3.9 53.5 1.0
CE F:LYS138 4.0 68.1 1.0
CZ2 F:TRP67 4.1 52.9 1.0
CA F:ASP134 4.2 51.6 1.0
CA F:PHE133 4.2 49.7 1.0
OD1 F:ASN77 4.3 61.9 1.0
C F:PHE133 4.3 49.8 1.0
CD1 F:PHE133 4.3 53.2 1.0
O F:ASP134 4.4 49.8 1.0
CG F:ASN77 4.5 60.9 1.0
O F:ASP132 4.7 43.4 1.0
CE1 F:PHE133 4.8 54.5 1.0
C F:ASP134 4.8 50.6 1.0
CG F:PHE133 4.8 52.3 1.0
CH2 F:TRP67 4.8 53.5 1.0
CB F:PHE133 4.9 51.4 1.0

Reference:

M.Totir, N.Echols, M.Nanao, C.L.Gee, A.Moskaleva, S.Gradia, A.T.Iavarone, J.M.Berger, A.P.May, C.Zubieta, T.Alber. Macro-to-Micro Structural Proteomics: Native Source Proteins For High-Throughput Crystallization. Plos One V. 7 32498 2012.
ISSN: ESSN 1932-6203
PubMed: 22393408
DOI: 10.1371/JOURNAL.PONE.0032498
Page generated: Sun Jul 21 04:18:10 2024

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