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Chlorine in PDB 3sdw: Crystal Structure of A Ribose-5-Phosphate Isomerase B Rpib From Coccidioides Immitis Bound to Phosphate

Protein crystallography data

The structure of Crystal Structure of A Ribose-5-Phosphate Isomerase B Rpib From Coccidioides Immitis Bound to Phosphate, PDB code: 3sdw was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.24 / 1.80
Space group F 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 77.700, 85.220, 96.290, 90.00, 90.00, 90.00
R / Rfree (%) 14.9 / 17.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Ribose-5-Phosphate Isomerase B Rpib From Coccidioides Immitis Bound to Phosphate (pdb code 3sdw). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of A Ribose-5-Phosphate Isomerase B Rpib From Coccidioides Immitis Bound to Phosphate, PDB code: 3sdw:

Chlorine binding site 1 out of 1 in 3sdw

Go back to Chlorine Binding Sites List in 3sdw
Chlorine binding site 1 out of 1 in the Crystal Structure of A Ribose-5-Phosphate Isomerase B Rpib From Coccidioides Immitis Bound to Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Ribose-5-Phosphate Isomerase B Rpib From Coccidioides Immitis Bound to Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl167

b:9.6
occ:0.50
N A:THR100 3.1 6.6 1.0
O A:HOH195 3.1 7.0 0.5
CA A:ASP99 3.5 6.2 1.0
CG2 A:THR100 3.7 7.2 1.0
CB A:ASP99 3.7 6.9 1.0
C A:ASP99 3.8 6.5 1.0
CB A:THR100 4.0 7.5 1.0
CA A:THR100 4.1 6.9 1.0
CD1 A:LEU126 4.3 8.8 1.0
O A:HIS98 4.4 9.8 1.0
CD2 A:LEU130 4.7 8.8 1.0
N A:ASP99 4.7 7.2 1.0
CG A:ASP99 5.0 8.9 1.0
C A:HIS98 5.0 10.1 1.0

Reference:

T.E.Edwards, A.B.Abramov, E.R.Smith, R.O.Baydo, J.T.Leonard, D.J.Leibly, K.B.Thompkins, M.C.Clifton, A.S.Gardberg, B.L.Staker, W.C.Van Voorhis, P.J.Myler, L.J.Stewart. Structural Characterization of A Ribose-5-Phosphate Isomerase B From the Pathogenic Fungus Coccidioides Immitis. Bmc Struct.Biol. V. 11 39 2011.
ISSN: ESSN 1472-6807
PubMed: 21995815
DOI: 10.1186/1472-6807-11-39
Page generated: Sat Dec 12 10:09:37 2020

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