Atomistry » Chlorine » PDB 3s8o-3seo » 3se1
Atomistry »
  Chlorine »
    PDB 3s8o-3seo »
      3se1 »

Chlorine in PDB 3se1: Frog M-Ferritin with Magnesium, R72D Mutant

Enzymatic activity of Frog M-Ferritin with Magnesium, R72D Mutant

All present enzymatic activity of Frog M-Ferritin with Magnesium, R72D Mutant:
1.16.3.1;

Protein crystallography data

The structure of Frog M-Ferritin with Magnesium, R72D Mutant, PDB code: 3se1 was solved by T.Tosha, H.L.Ng, T.Alber, E.C.Theil, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 91.67 / 1.65
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 183.560, 183.560, 183.560, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 20.3

Other elements in 3se1:

The structure of Frog M-Ferritin with Magnesium, R72D Mutant also contains other interesting chemical elements:

Magnesium (Mg) 9 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Frog M-Ferritin with Magnesium, R72D Mutant (pdb code 3se1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the Frog M-Ferritin with Magnesium, R72D Mutant, PDB code: 3se1:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Chlorine binding site 1 out of 9 in 3se1

Go back to Chlorine Binding Sites List in 3se1
Chlorine binding site 1 out of 9 in the Frog M-Ferritin with Magnesium, R72D Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Frog M-Ferritin with Magnesium, R72D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl180

b:20.9
occ:1.00
O A:HOH409 2.7 35.0 1.0
N A:ASP87 3.1 11.2 1.0
O A:HOH251 3.1 29.0 1.0
O A:HOH274 3.4 35.6 1.0
N A:GLU88 3.7 9.2 1.0
CA A:ARG86 3.8 9.7 1.0
CB A:ARG86 3.9 11.4 1.0
CA A:ASP87 3.9 10.6 1.0
C A:ARG86 3.9 10.0 1.0
CB A:ASP87 4.0 10.6 1.0
O A:HOH250 4.1 41.5 1.0
O A:GLU88 4.1 10.7 1.0
CG A:GLU88 4.1 12.4 1.0
C A:ASP87 4.3 11.6 1.0
CG A:ARG86 4.3 11.2 1.0
OE2 A:GLU88 4.6 27.1 1.0
CA A:GLU88 4.6 10.2 1.0
O A:HOH421 4.6 36.0 1.0
NE A:ARG86 4.6 19.8 1.0
CG A:ASP87 4.7 16.1 1.0
OD2 A:ASP87 4.7 15.2 1.0
C A:GLU88 4.8 11.4 1.0
CB A:GLU88 4.8 12.4 1.0

Chlorine binding site 2 out of 9 in 3se1

Go back to Chlorine Binding Sites List in 3se1
Chlorine binding site 2 out of 9 in the Frog M-Ferritin with Magnesium, R72D Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Frog M-Ferritin with Magnesium, R72D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl185

b:19.8
occ:1.00
O A:HOH430 3.0 24.1 1.0
NE2 A:GLN108 3.3 11.3 0.5
ND2 A:ASN107 3.4 10.9 1.0
O A:HOH280 3.6 45.8 1.0
CG A:LYS104 3.8 9.2 1.0
CB A:LYS104 3.8 7.9 1.0
O A:LYS104 3.9 7.4 1.0
CB A:ASN107 3.9 6.8 1.0
CA A:LYS104 3.9 8.7 1.0
CG A:GLN108 4.0 5.8 0.5
CG A:ASN107 4.1 10.8 1.0
CD A:GLN108 4.1 10.8 0.5
O A:HOH362 4.3 20.3 1.0
C A:LYS104 4.4 9.3 1.0
CD1 A:ILE141 4.4 7.9 1.0
CD A:LYS104 4.5 19.1 1.0
N A:GLN108 4.8 6.6 1.0
CE A:LYS104 4.9 26.1 1.0

Chlorine binding site 3 out of 9 in 3se1

Go back to Chlorine Binding Sites List in 3se1
Chlorine binding site 3 out of 9 in the Frog M-Ferritin with Magnesium, R72D Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Frog M-Ferritin with Magnesium, R72D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl186

b:5.1
occ:0.25
NE2 A:HIS169 3.1 6.0 1.0
CE1 A:HIS169 3.9 6.2 1.0
CD2 A:LEU165 3.9 11.2 1.0
CD2 A:HIS169 4.3 5.5 1.0
CL A:CL189 4.9 3.9 0.2

Chlorine binding site 4 out of 9 in 3se1

Go back to Chlorine Binding Sites List in 3se1
Chlorine binding site 4 out of 9 in the Frog M-Ferritin with Magnesium, R72D Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Frog M-Ferritin with Magnesium, R72D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl187

b:24.4
occ:1.00
OG A:SER10 3.2 29.9 1.0
N A:CYS12 3.2 17.0 1.0
O A:HOH339 3.6 21.6 1.0
CG A:LYS120 3.7 13.2 1.0
N A:ASP11 3.7 27.8 1.0
SG A:CYS12 3.8 16.9 1.0
CB A:CYS12 3.9 15.1 1.0
CE A:LYS120 3.9 22.8 1.0
CD A:LYS120 4.0 21.0 1.0
CA A:CYS12 4.1 14.9 1.0
C A:ASP11 4.2 19.8 1.0
CB A:SER10 4.2 35.0 1.0
CA A:ASP11 4.3 23.9 1.0
CB A:LYS120 4.3 11.2 1.0
C A:SER10 4.4 30.2 1.0
NZ A:LYS120 4.4 28.6 1.0
CA A:SER10 4.5 34.1 1.0
CB A:ASP11 4.6 26.2 1.0
CG A:ASP11 4.9 34.4 1.0

Chlorine binding site 5 out of 9 in 3se1

Go back to Chlorine Binding Sites List in 3se1
Chlorine binding site 5 out of 9 in the Frog M-Ferritin with Magnesium, R72D Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Frog M-Ferritin with Magnesium, R72D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl188

b:50.3
occ:1.00
NH2 A:ARG18 3.2 22.7 1.0
NH1 A:ARG18 3.3 25.2 1.0
O A:HOH389 3.6 31.9 1.0
O A:HOH211 3.7 31.1 1.0
CZ A:ARG18 3.7 20.9 1.0
CB A:ALA14 3.8 10.5 1.0
CB A:ASP11 3.8 26.2 1.0
O A:ASP11 3.9 13.0 1.0
CA A:ASP11 4.0 23.9 1.0
O A:HOH202 4.4 28.3 1.0
CG A:ASP11 4.5 34.4 1.0
C A:ASP11 4.5 19.8 1.0
OD1 A:ASP11 4.5 43.6 1.0
N A:ALA15 5.0 7.7 1.0

Chlorine binding site 6 out of 9 in 3se1

Go back to Chlorine Binding Sites List in 3se1
Chlorine binding site 6 out of 9 in the Frog M-Ferritin with Magnesium, R72D Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Frog M-Ferritin with Magnesium, R72D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl189

b:3.9
occ:0.25
O A:HOH257 3.7 46.3 1.0
CE1 A:HIS169 4.1 6.2 1.0
NE2 A:HIS169 4.8 6.0 1.0
ND1 A:HIS169 4.9 8.1 1.0
CL A:CL186 4.9 5.1 0.2

Chlorine binding site 7 out of 9 in 3se1

Go back to Chlorine Binding Sites List in 3se1
Chlorine binding site 7 out of 9 in the Frog M-Ferritin with Magnesium, R72D Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Frog M-Ferritin with Magnesium, R72D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl190

b:36.2
occ:1.00
CB A:ASN21 3.7 5.5 1.0
O A:HOH397 3.7 36.0 1.0
CG A:GLN79 3.8 9.8 1.0
CG A:ASN21 3.9 6.3 1.0
OD1 A:ASN21 4.0 7.3 1.0
CG A:ARG18 4.0 15.1 1.0
CB A:GLN79 4.1 7.2 1.0
CA A:ARG18 4.1 6.5 1.0
CB A:ARG18 4.4 8.2 1.0
ND2 A:ASN21 4.4 5.7 1.0
O A:ARG18 4.7 6.5 1.0
O A:ASN17 4.7 7.8 1.0
O A:HOH302 4.7 12.8 1.0
O A:HOH337 4.7 18.6 1.0
N A:ARG18 4.9 5.2 1.0
C A:ARG18 4.9 5.6 1.0
CD A:ARG18 4.9 20.8 1.0
O A:HOH363 4.9 25.1 1.0

Chlorine binding site 8 out of 9 in 3se1

Go back to Chlorine Binding Sites List in 3se1
Chlorine binding site 8 out of 9 in the Frog M-Ferritin with Magnesium, R72D Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Frog M-Ferritin with Magnesium, R72D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl191

b:20.4
occ:1.00
OG A:SER170 2.8 10.7 1.0
O A:HOH263 2.8 16.7 1.0
O A:HOH236 3.2 6.8 1.0
O A:HOH199 3.3 33.4 1.0
CG A:ASN150 3.4 4.2 1.0
ND2 A:ASN150 3.5 5.0 1.0
CB A:SER170 3.6 10.3 1.0
CB A:ASN150 3.7 6.8 1.0
CD1 A:PHE147 3.9 10.1 1.0
OD1 A:ASN150 4.1 7.3 1.0
CE1 A:PHE147 4.1 15.3 1.0
CE1 A:PHE166 4.3 9.8 1.0
CA A:SER170 4.4 9.9 1.0
CD1 A:PHE166 4.8 8.4 1.0
O A:ASP146 4.9 7.0 1.0
CA A:PHE147 4.9 6.6 1.0

Chlorine binding site 9 out of 9 in 3se1

Go back to Chlorine Binding Sites List in 3se1
Chlorine binding site 9 out of 9 in the Frog M-Ferritin with Magnesium, R72D Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Frog M-Ferritin with Magnesium, R72D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl192

b:55.8
occ:1.00
NZ A:LYS64 3.0 32.9 1.0
CD2 A:HIS61 3.3 29.8 1.0
CE A:LYS64 3.3 34.4 1.0
NE2 A:HIS61 3.6 37.5 1.0
O A:HOH254 3.8 41.5 1.0
CB A:GLU60 4.0 13.6 1.0
CD A:LYS64 4.2 27.2 1.0
CG A:LYS64 4.2 21.1 1.0
C A:GLU60 4.3 9.4 1.0
O A:GLU60 4.4 10.8 1.0
N A:HIS61 4.4 10.5 1.0
CG A:HIS61 4.5 20.0 1.0
OE1 A:GLU60 4.5 34.8 1.0
O A:HOH253 4.5 27.9 1.0
CA A:HIS61 4.7 11.1 1.0
CE1 A:HIS61 4.8 35.2 1.0
CA A:GLU60 4.8 11.6 1.0

Reference:

T.Tosha, H.L.Ng, T.Alber, E.C.Theil. Frog M-Ferritin with Magnesium, R72D Mutant To Be Published.
Page generated: Fri Jul 11 10:14:59 2025

Last articles

Cl in 8BST
Cl in 8BT7
Cl in 8BTA
Cl in 8BT2
Cl in 8BSG
Cl in 8BT1
Cl in 8BSD
Cl in 8BSR
Cl in 8BRN
Cl in 8BS0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy