Chlorine in PDB 3seo: Crystal Structure of Vopl C Terminal Domain

The structure of Crystal Structure of Vopl C Terminal Domain, PDB code: 3seo was solved by B.Yu, M.K.Rosen, D.R.Tomchick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.15 / 2.31
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	55.180, 89.851, 103.007, 90.00, 90.00, 90.00
R / Rfree (%)	22.1 / 27.5

The binding sites of Chlorine atom in the Crystal Structure of Vopl C Terminal Domain (pdb code 3seo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the Crystal Structure of Vopl C Terminal Domain, PDB code: 3seo:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Chlorine binding site 1 out of 9 in the Crystal Structure of Vopl C Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Vopl C Terminal Domain within 5.0Å range:

Chlorine binding site 2 out of 9 in the Crystal Structure of Vopl C Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Vopl C Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl242 b:0.2 occ:1.00 O B:ALA183 3.0 46.2 1.0 N B:GLY187 3.8 47.6 1.0 C B:ALA183 3.9 47.5 1.0 CA B:GLY187 3.9 53.8 1.0 OH B:TYR217 4.2 58.4 1.0 CA B:ALA183 4.3 46.7 1.0 CB B:ALA183 4.3 56.5 1.0 OH A:TYR219 4.4 55.5 1.0 CE1 B:TYR217 4.5 59.1 1.0 CB B:ALA186 4.6 44.3 1.0 C B:ALA186 4.7 50.6 1.0 CZ B:TYR217 4.9 55.6 1.0 N B:LEU184 4.9 41.6 1.0

Chlorine binding site 3 out of 9 in the Crystal Structure of Vopl C Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Vopl C Terminal Domain within 5.0Å range:

Chlorine binding site 4 out of 9 in the Crystal Structure of Vopl C Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Vopl C Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl244 b:94.9 occ:1.00 N B:ALA173 3.1 58.0 1.0 CB B:ALA173 3.4 54.7 1.0 O B:HOH252 3.5 68.7 1.0 N B:PHE172 3.8 45.0 1.0 CA B:ALA173 3.9 48.5 1.0 CB B:PHE172 4.0 47.9 1.0 O B:ASP170 4.0 96.0 1.0 O B:MET169 4.1 53.1 1.0 C B:PHE172 4.1 54.5 1.0 CA B:PHE172 4.1 53.9 1.0 CE1 B:PHE181 4.2 60.8 1.0 CD1 B:PHE181 4.3 58.1 1.0 C B:GLY171 4.5 64.7 1.0 C B:ASP170 4.9 78.1 1.0 CZ B:PHE181 5.0 56.8 1.0 N B:GLU174 5.0 46.0 1.0

Chlorine binding site 5 out of 9 in the Crystal Structure of Vopl C Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Vopl C Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl245 b:98.5 occ:1.00 NE2 B:HIS2 4.7 0.3 1.0

Chlorine binding site 6 out of 9 in the Crystal Structure of Vopl C Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Vopl C Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl246 b:98.6 occ:1.00 O B:HOH255 3.2 57.6 1.0 ND2 B:ASN224 3.7 50.4 1.0 CA B:GLY221 3.9 37.7 1.0 CB B:SER215 4.1 53.5 1.0 OG B:SER215 4.4 63.5 1.0 CB B:ASN224 4.4 54.6 1.0 O B:HOH257 4.4 70.8 1.0 CG B:ASN224 4.6 65.0 1.0 O B:GLY221 4.6 58.9 1.0 N B:GLY221 4.7 42.1 1.0 C B:GLY221 4.8 52.8 1.0 O B:GLN220 4.9 47.6 1.0

Chlorine binding site 7 out of 9 in the Crystal Structure of Vopl C Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Vopl C Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl247 b:0.2 occ:1.00 O B:LYS74 3.6 82.9 1.0 N B:THR116 3.6 82.5 1.0 CB B:THR116 3.9 86.0 1.0 OG1 B:THR115 4.1 84.6 1.0 CG B:PRO76 4.1 89.8 1.0 CD B:PRO76 4.1 92.6 1.0 OG1 B:THR116 4.2 77.3 1.0 C B:THR115 4.2 81.1 1.0 CA B:THR115 4.3 70.6 1.0 CA B:THR116 4.4 76.1 1.0 C B:LYS74 4.7 72.2 1.0 CB B:THR115 4.8 81.3 1.0

Chlorine binding site 8 out of 9 in the Crystal Structure of Vopl C Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Vopl C Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl248 b:0.8 occ:1.00 OD1 B:ASP170 3.7 66.8 1.0 O B:GLU165 4.1 63.7 1.0 CG B:ASP170 4.2 73.4 1.0 CA B:PRO167 4.5 52.8 1.0 CB B:ASP170 4.6 55.0 1.0 O B:LEU166 4.8 59.3 1.0 N B:PRO167 4.9 55.3 1.0 CA B:ASP170 4.9 58.9 1.0 OD2 B:ASP170 4.9 76.3 1.0

Chlorine binding site 9 out of 9 in the Crystal Structure of Vopl C Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Vopl C Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl249 b:0.6 occ:1.00 O B:LYS193 3.8 88.9 1.0 O B:PHE192 3.8 83.0 1.0 OG1 B:THR195 4.4 0.6 1.0 C B:LYS193 4.5 99.9 1.0 C B:PHE192 4.6 91.5 1.0 N B:THR195 4.8 0.6 1.0 CB B:PHE192 4.9 74.8 1.0

B.Yu, H.C.Cheng, C.A.Brautigam, D.R.Tomchick, M.K.Rosen. Mechanism of Actin Filament Nucleation By the Bacterial Effector Vopl. Nat.Struct.Mol.Biol. V. 18 1068 2011.
ISSN: ISSN 1545-9993
PubMed: 21873984
DOI: 10.1038/NSMB.2110