Atomistry » Chlorine » PDB 3seo-3smb » 3sgl
Atomistry »
  Chlorine »
    PDB 3seo-3smb »
      3sgl »

Chlorine in PDB 3sgl: The Crystal Structure of Mnmc From Yersinia Pestis Bound with Fad and Sam

Enzymatic activity of The Crystal Structure of Mnmc From Yersinia Pestis Bound with Fad and Sam

All present enzymatic activity of The Crystal Structure of Mnmc From Yersinia Pestis Bound with Fad and Sam:
2.1.1.61;

Protein crystallography data

The structure of The Crystal Structure of Mnmc From Yersinia Pestis Bound with Fad and Sam, PDB code: 3sgl was solved by J.Kim, S.C.Almo, New York Structural Genomics Research Consortium(Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 66.085, 59.815, 100.797, 90.00, 100.18, 90.00
R / Rfree (%) 18 / 25.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of Mnmc From Yersinia Pestis Bound with Fad and Sam (pdb code 3sgl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the The Crystal Structure of Mnmc From Yersinia Pestis Bound with Fad and Sam, PDB code: 3sgl:

Chlorine binding site 1 out of 1 in 3sgl

Go back to Chlorine Binding Sites List in 3sgl
Chlorine binding site 1 out of 1 in the The Crystal Structure of Mnmc From Yersinia Pestis Bound with Fad and Sam


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of Mnmc From Yersinia Pestis Bound with Fad and Sam within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl691

b:22.4
occ:1.00
O A:HOH778 3.0 8.4 1.0
C4X A:FAD690 3.3 12.7 1.0
CG A:PRO411 3.4 17.0 1.0
C10 A:FAD690 3.4 11.9 1.0
CA A:GLY309 3.5 16.6 1.0
N5 A:FAD690 3.5 13.2 1.0
ND2 A:ASN306 3.6 17.9 1.0
CB A:ASN306 3.6 19.2 1.0
N10 A:FAD690 3.7 9.9 1.0
C5X A:FAD690 3.8 10.5 1.0
C9A A:FAD690 3.9 8.9 1.0
C4 A:FAD690 3.9 12.5 1.0
N1 A:FAD690 4.1 11.9 1.0
N A:GLY309 4.1 17.4 1.0
CG A:ASN306 4.1 20.4 1.0
CD2 A:LEU632 4.3 16.1 1.0
CB A:PRO411 4.3 16.8 1.0
CD A:PRO411 4.4 16.9 1.0
N3 A:FAD690 4.4 9.5 1.0
O4 A:FAD690 4.4 13.7 1.0
O A:GLN308 4.4 16.7 1.0
C A:GLN308 4.4 17.4 1.0
C2 A:FAD690 4.5 10.5 1.0
C1' A:FAD690 4.5 12.1 1.0
CD1 A:LEU632 4.6 15.2 1.0
C6 A:FAD690 4.6 10.1 1.0
C A:GLY309 4.7 16.2 1.0
C9 A:FAD690 4.8 9.0 1.0
CA A:ASN306 4.8 18.5 1.0

Reference:

J.Kim, S.C.Almo. Structural Basis For Hypermodification of the Wobble Uridine in Trna By Bifunctional Enzyme Mnmc. Bmc Struct.Biol. V. 13 5 2013.
ISSN: ESSN 1472-6807
PubMed: 23617613
DOI: 10.1186/1472-6807-13-5
Page generated: Sat Dec 12 10:09:55 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy