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Chlorine in PDB 3shx: Frog M-Ferritin with Magnesium, L134P Mutant

Enzymatic activity of Frog M-Ferritin with Magnesium, L134P Mutant

All present enzymatic activity of Frog M-Ferritin with Magnesium, L134P Mutant:
1.16.3.1;

Protein crystallography data

The structure of Frog M-Ferritin with Magnesium, L134P Mutant, PDB code: 3shx was solved by T.Tosha, H.L.Ng, T.Alber, E.C.Theil, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.38 / 1.35
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 183.775, 183.775, 183.775, 90.00, 90.00, 90.00
R / Rfree (%) 13.7 / 16.3

Other elements in 3shx:

The structure of Frog M-Ferritin with Magnesium, L134P Mutant also contains other interesting chemical elements:

Magnesium (Mg) 10 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Frog M-Ferritin with Magnesium, L134P Mutant (pdb code 3shx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Frog M-Ferritin with Magnesium, L134P Mutant, PDB code: 3shx:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 3shx

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Chlorine binding site 1 out of 7 in the Frog M-Ferritin with Magnesium, L134P Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Frog M-Ferritin with Magnesium, L134P Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl181

b:25.9
occ:1.00
 O A:HOH300 2.7 41.8 1.0
OG1 A:THR105 3.2 14.6 1.0
O A:HOH287 3.2 17.6 1.0
NE2 A:GLN101 3.4 42.6 1.0
CG A:GLN101 3.6 22.0 1.0
CA A:LEU102 3.6 11.1 1.0
O A:GLN101 3.7 11.9 1.0
O A:HOH262 3.7 31.7 1.0
N A:LEU102 3.8 10.3 1.0
CB A:THR105 3.8 13.0 1.0
C A:GLN101 3.8 11.1 1.0
CD A:GLN101 4.0 34.6 1.0
CB A:LEU102 4.3 11.7 1.0
CD1 A:LEU102 4.3 15.6 1.0
CB A:GLN101 4.4 13.6 1.0
CG2 A:THR105 4.4 15.7 1.0
O A:HOH392 4.7 27.7 1.0
CA A:GLN101 4.8 11.9 1.0
C A:LEU102 4.8 10.7 1.0
O A:HOH315 4.8 22.9 1.0
CG A:LEU102 4.9 12.9 1.0
O A:LEU102 4.9 12.0 1.0

Chlorine binding site 2 out of 7 in 3shx

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Chlorine binding site 2 out of 7 in the Frog M-Ferritin with Magnesium, L134P Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Frog M-Ferritin with Magnesium, L134P Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl182

b:29.6
occ:1.00
 O A:HOH337 2.7 48.5 1.0
N A:SER10 3.1 12.8 1.0
O A:HOH253 3.1 41.0 1.0
CB A:SER10 3.6 13.9 1.0
CA A:HIS9 3.8 11.5 1.0
O A:HOH437 3.8 32.5 1.0
CD2 A:HIS9 3.8 16.0 1.0
CG A:HIS9 3.9 13.8 1.0
C A:HIS9 3.9 11.6 1.0
ND1 A:HIS9 4.0 13.6 1.0
CA A:SER10 4.0 12.2 1.0
NE2 A:HIS9 4.0 15.3 1.0
CE1 A:HIS9 4.0 14.0 1.0
O A:TYR8 4.4 11.9 1.0
CB A:HIS9 4.4 12.6 1.0
O A:HOH427 4.7 37.2 1.0
N A:HIS9 4.9 11.6 1.0
O A:HOH288 4.9 39.3 1.0
OG A:SER10 5.0 17.0 1.0

Chlorine binding site 3 out of 7 in 3shx

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Chlorine binding site 3 out of 7 in the Frog M-Ferritin with Magnesium, L134P Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Frog M-Ferritin with Magnesium, L134P Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl183

b:19.7
occ:1.00
 O A:HOH292 2.8 43.8 1.0
O A:HOH437 3.2 32.5 1.0
N A:TYR8 3.3 10.2 1.0
N A:ASN7 3.4 10.9 1.0
O A:TYR8 3.5 11.9 1.0
CD A:ARG5 3.5 12.8 1.0
NE A:ARG5 3.6 12.3 1.0
CG A:ARG5 3.6 11.1 1.0
O A:HOH318 4.0 23.9 1.0
C A:GLN6 4.0 10.6 1.0
C A:TYR8 4.1 11.8 1.0
CA A:GLN6 4.1 10.8 1.0
CA A:TYR8 4.1 10.9 1.0
N A:GLN6 4.1 10.9 1.0
CA A:ASN7 4.1 10.8 1.0
C A:ASN7 4.2 10.5 1.0
C A:ARG5 4.4 10.3 1.0
CB A:TYR8 4.4 10.4 1.0
CB A:ARG5 4.5 11.8 1.0
O A:ARG5 4.6 11.7 1.0
CZ A:ARG5 4.8 11.5 1.0
O A:GLN6 4.8 11.9 1.0

Chlorine binding site 4 out of 7 in 3shx

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Chlorine binding site 4 out of 7 in the Frog M-Ferritin with Magnesium, L134P Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Frog M-Ferritin with Magnesium, L134P Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl185

b:38.7
occ:1.00
 NH1 A:ARG143 2.7 28.1 0.5
NH2 A:ARG143 2.7 34.4 0.5
CZ A:ARG143 3.1 31.9 0.5
N A:LYS172 3.3 27.3 1.0
O A:HOH226 3.3 39.5 1.0
CA A:VAL171 3.8 19.5 1.0
CE A:LYS172 3.9 47.5 1.0
CB A:LYS172 3.9 32.7 1.0
CD1 A:PHE50 3.9 15.4 1.0
NH2 A:ARG143 4.0 36.8 0.5
C A:VAL171 4.0 22.4 1.0
CB A:VAL171 4.2 17.6 1.0
CA A:LYS172 4.2 29.8 1.0
CG1 A:VAL171 4.2 18.1 1.0
NE A:ARG143 4.3 32.6 0.5
CE1 A:PHE50 4.4 17.7 1.0
O A:SER170 4.5 18.3 1.0
CG A:LYS172 4.6 38.2 1.0
O A:HOH341 4.7 22.2 1.0
CZ A:PHE147 4.8 15.8 1.0
NZ A:LYS172 4.8 50.7 1.0
CD A:LYS172 4.9 42.7 1.0
CG A:PHE50 4.9 15.1 1.0
CZ A:ARG143 4.9 30.5 0.5
NE A:ARG143 5.0 29.6 0.5
N A:VAL171 5.0 17.0 1.0

Chlorine binding site 5 out of 7 in 3shx

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Chlorine binding site 5 out of 7 in the Frog M-Ferritin with Magnesium, L134P Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Frog M-Ferritin with Magnesium, L134P Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl187

b:12.3
occ:0.25
 NE2 A:HIS169 3.2 13.4 1.0
CD2 A:LEU165 3.9 13.8 1.0
CE1 A:HIS169 3.9 15.7 1.0
CD2 A:HIS169 4.3 12.2 1.0
MG A:MG178 5.0 15.6 0.2

Chlorine binding site 6 out of 7 in 3shx

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Chlorine binding site 6 out of 7 in the Frog M-Ferritin with Magnesium, L134P Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Frog M-Ferritin with Magnesium, L134P Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl188

b:57.9
occ:1.00
 NZ A:LYS139 4.9 44.2 1.0

Chlorine binding site 7 out of 7 in 3shx

Go back to Chlorine Binding Sites List in 3shx
Chlorine binding site 7 out of 7 in the Frog M-Ferritin with Magnesium, L134P Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Frog M-Ferritin with Magnesium, L134P Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl191

b:23.2
occ:1.00
 O A:HOH229 2.7 35.4 1.0
O A:HOH316 3.1 37.4 1.0
N A:ASP87 3.1 11.3 1.0
N A:GLU88 3.7 11.4 1.0
CA A:ARG86 3.8 11.4 1.0
CB A:ARG86 3.9 11.5 1.0
CA A:ASP87 4.0 11.5 1.0
C A:ARG86 4.0 10.4 1.0
CB A:ASP87 4.0 13.2 1.0
CG A:GLU88 4.0 16.6 1.0
O A:GLU88 4.1 13.3 1.0
O A:HOH284 4.2 41.6 1.0
CG A:ARG86 4.3 13.7 1.0
C A:ASP87 4.3 11.4 1.0
O A:HOH235 4.5 36.5 1.0
CA A:GLU88 4.6 12.2 1.0
OE2 A:GLU88 4.6 29.6 1.0
CG A:ASP87 4.6 14.3 1.0
OD2 A:ASP87 4.6 22.7 1.0
O A:HOH307 4.7 36.1 1.0
NE A:ARG86 4.7 19.4 1.0
CB A:GLU88 4.7 14.5 1.0
C A:GLU88 4.8 11.5 1.0

Reference:

T.Tosha, H.L.Ng, T.Alber, E.C.Theil. Frog M-Ferritin with Magnesium, L134P Mutant To Be Published.
Page generated: Sat Dec 12 10:09:59 2020

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