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Chlorine in PDB 3six: Crystal Structure of Nodz Alpha-1,6-Fucosyltransferase Soaked with Gdp-Fucose

Protein crystallography data

The structure of Crystal Structure of Nodz Alpha-1,6-Fucosyltransferase Soaked with Gdp-Fucose, PDB code: 3six was solved by K.Brzezinski, Z.Dauter, M.Jaskolski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.35
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 128.800, 128.800, 91.100, 90.00, 90.00, 120.00
R / Rfree (%) 21 / 25.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Nodz Alpha-1,6-Fucosyltransferase Soaked with Gdp-Fucose (pdb code 3six). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Nodz Alpha-1,6-Fucosyltransferase Soaked with Gdp-Fucose, PDB code: 3six:

Chlorine binding site 1 out of 1 in 3six

Go back to Chlorine Binding Sites List in 3six
Chlorine binding site 1 out of 1 in the Crystal Structure of Nodz Alpha-1,6-Fucosyltransferase Soaked with Gdp-Fucose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Nodz Alpha-1,6-Fucosyltransferase Soaked with Gdp-Fucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl601

b:58.8
occ:1.00
O A:HOH334 3.1 45.2 1.0
NH1 A:ARG142 3.3 59.9 1.0
CG A:ARG142 3.5 45.8 1.0
CD A:ARG142 3.6 50.1 1.0
CB A:ARG142 3.7 45.1 1.0
CD2 A:LEU296 4.0 57.5 1.0
CD A:ARG146 4.2 48.8 1.0
CZ A:ARG142 4.3 58.3 1.0
NE A:ARG142 4.4 51.2 1.0
CG A:ARG146 4.5 44.2 1.0
CA A:ARG142 4.6 43.8 1.0
O A:ARG142 4.8 41.7 1.0
O A:HOH409 4.9 65.7 1.0
O A:HOH346 5.0 48.9 1.0

Reference:

K.Brzezinski, Z.Dauter, M.Jaskolski. Structures of Nodz Alpha-1,6-Fucosyltransferase in Complex with Gdp and Gdp-Fucose Acta Crystallogr.,Sect.D V. 68 160 2012.
ISSN: ISSN 0907-4449
PubMed: 22281745
DOI: 10.1107/S0907444911053157
Page generated: Sat Dec 12 10:10:03 2020

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