Chlorine in PDB 3siy: Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution

The structure of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution, PDB code: 3siy was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	58.80 / 1.35
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	118.907, 48.132, 144.732, 90.00, 98.44, 90.00
R / Rfree (%)	13.7 / 17.2

The structure of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Zinc	(Zn)	4 atoms

The binding sites of Chlorine atom in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution (pdb code 3siy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution, PDB code: 3siy:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl401 b:28.6 occ:1.00 O A:HOH1489 2.6 33.4 1.0 O A:HOH517 3.1 15.3 1.0 O A:HOH826 3.1 19.1 1.0 NE A:ARG130 3.2 15.0 1.0 NH2 A:ARG130 3.9 21.1 1.0 CE A:MSE209 3.9 14.2 1.0 CZ A:ARG130 4.0 18.1 1.0 CG A:ARG130 4.0 12.6 1.0 CD A:ARG130 4.0 13.7 1.0 CB A:CYS126 4.2 8.2 1.0 CG1 A:VAL123 4.5 10.5 1.0 NE1 A:TRP181 4.5 27.4 1.0 CA A:CYS126 4.5 8.7 1.0 O A:ALA124 4.6 9.2 1.0 N A:CYS126 4.8 8.4 1.0 O A:HOH409 4.9 9.3 1.0 CD1 A:ILE214 4.9 18.1 1.0 CE A:MSE169 4.9 12.9 0.5

Chlorine binding site 2 out of 8 in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl402 b:28.9 occ:1.00 O B:HOH531 3.1 15.6 1.0 O B:HOH900 3.1 27.5 1.0 NE B:ARG130 3.2 14.2 1.0 NH2 B:ARG130 3.6 17.4 1.0 CZ B:ARG130 3.9 15.2 1.0 CE B:MSE209 3.9 15.8 1.0 CG B:ARG130 4.1 11.9 1.0 CD B:ARG130 4.2 13.1 1.0 CB B:CYS126 4.3 8.3 1.0 CG1 B:VAL123 4.4 10.6 1.0 O B:ALA124 4.7 8.4 1.0 NE1 B:TRP181 4.7 21.1 1.0 CA B:CYS126 4.7 8.3 1.0 CD1 B:ILE214 4.9 18.0 1.0 CE B:MSE169 4.9 15.9 0.5 CD1 B:LEU212 4.9 24.4 1.0 N B:CYS126 4.9 8.6 1.0

Chlorine binding site 3 out of 8 in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl405 b:41.4 occ:1.00 O A:HOH1382 3.4 33.0 1.0 O A:HOH1491 3.4 30.1 1.0 N B:GLY176 3.7 23.5 1.0 CA B:GLY176 3.9 23.1 1.0 O A:HOH1368 4.1 30.6 1.0 C B:GLY176 4.8 22.0 1.0 C B:GLU175 4.9 24.8 1.0

Chlorine binding site 4 out of 8 in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl403 b:35.4 occ:1.00 O C:HOH739 3.1 28.5 1.0 O C:HOH606 3.1 17.0 1.0 NE C:ARG130 3.1 20.5 1.0 NH2 C:ARG130 3.8 22.1 1.0 CE C:MSE209 3.9 18.2 1.0 CZ C:ARG130 3.9 21.4 1.0 CG C:ARG130 3.9 15.2 1.0 CD C:ARG130 4.0 17.7 1.0 CB C:CYS126 4.1 9.3 1.0 CA C:CYS126 4.5 9.4 1.0 CG1 C:VAL123 4.6 11.8 1.0 O C:ALA124 4.6 9.8 1.0 N C:CYS126 4.7 8.5 1.0 O C:HOH1408 4.8 24.1 1.0 CD1 C:ILE214 4.9 28.1 1.0 O C:HOH411 4.9 11.4 1.0 NH1 D:ARG104 5.0 14.0 1.0 NH2 D:ARG104 5.0 14.3 1.0

Chlorine binding site 5 out of 8 in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl407 b:22.4 occ:1.00 O D:HOH776 3.0 17.9 1.0 NE C:ARG103 3.1 13.9 1.0 O D:HOH981 3.2 25.8 1.0 O D:HOH667 3.2 16.9 1.0 NH2 C:ARG103 3.5 16.2 1.0 CE1 D:HIS129 3.5 23.6 1.0 CZ C:ARG103 3.7 14.1 1.0 CD1 D:PHE8 3.8 12.5 1.0 NE2 D:HIS129 4.0 25.1 1.0 CE1 D:PHE4 4.0 28.1 1.0 CG C:ARG103 4.1 12.8 1.0 CD C:ARG103 4.1 14.7 1.0 CE1 D:PHE8 4.2 14.3 1.0 O D:HOH593 4.4 15.8 1.0 OD1 D:ASP14 4.6 17.6 1.0 CD1 D:PHE4 4.6 27.6 1.0 ND1 D:HIS129 4.7 22.0 1.0 NH2 D:ARG12 4.8 24.5 1.0 CG D:PHE8 4.9 12.4 1.0 O B:HOH748 5.0 33.6 1.0 CA D:PHE8 5.0 13.8 1.0 CZ D:PHE4 5.0 26.9 1.0

Chlorine binding site 6 out of 8 in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl404 b:31.1 occ:1.00 O D:HOH1490 2.7 37.5 1.0 O D:HOH608 3.1 17.3 1.0 O D:HOH725 3.1 19.4 1.0 NE D:ARG130 3.2 18.7 1.0 CG D:ARG130 3.8 15.5 1.0 CE D:MSE209 3.9 14.5 1.0 CB D:CYS126 3.9 10.1 1.0 CD D:ARG130 4.0 17.2 1.0 NH2 D:ARG130 4.1 22.7 1.0 CZ D:ARG130 4.1 22.2 1.0 CA D:CYS126 4.3 9.1 1.0 O D:ALA124 4.4 9.3 1.0 N D:CYS126 4.5 8.6 1.0 CG1 D:VAL123 4.6 10.8 1.0 O D:HOH412 4.8 10.2 1.0 NH2 C:ARG104 4.9 12.8 1.0 NH1 C:ARG104 4.9 13.4 1.0 NE1 D:TRP181 4.9 28.4 1.0 CB D:ARG130 4.9 13.9 1.0

Chlorine binding site 7 out of 8 in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl406 b:46.5 occ:1.00 CD2 D:HIS129 3.5 21.6 1.0 CG2 D:VAL128 3.9 15.1 1.0 NE2 D:HIS129 3.9 25.1 1.0 O D:VAL128 4.2 14.4 1.0 C D:VAL128 4.3 13.6 1.0 CB D:VAL128 4.3 14.2 1.0 CB D:ALA132 4.4 16.6 1.0 CG D:HIS129 4.4 19.5 1.0 N D:HIS129 4.5 13.7 1.0 CA D:HIS129 4.5 14.7 1.0 O C:HOH978 4.5 32.7 1.0 CE1 D:HIS129 5.0 23.6 1.0 CA D:VAL128 5.0 13.0 1.0

Chlorine binding site 8 out of 8 in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl408 b:44.4 occ:1.00 O D:HOH649 2.9 18.9 1.0 O D:HOH872 2.9 25.8 1.0 CB D:PRO39 3.8 9.1 1.0 O D:HOH1081 4.0 31.2 1.0 O D:HOH534 4.5 21.4 1.0 N D:ALA40 4.6 10.2 1.0 CA D:PRO39 4.6 9.5 1.0 NE2 D:GLN42 4.7 11.8 1.0 CG D:PRO39 4.7 11.0 1.0 O D:ALA40 4.9 10.7 1.0 O D:HOH1218 4.9 27.7 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.