Atomistry » Chlorine » PDB 3sei-3sm9 » 3siy
Atomistry »
  Chlorine »
    PDB 3sei-3sm9 »
      3siy »

Chlorine in PDB 3siy: Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution

Protein crystallography data

The structure of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution, PDB code: 3siy was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 58.80 / 1.35
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 118.907, 48.132, 144.732, 90.00, 98.44, 90.00
R / Rfree (%) 13.7 / 17.2

Other elements in 3siy:

The structure of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution (pdb code 3siy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution, PDB code: 3siy:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 3siy

Go back to Chlorine Binding Sites List in 3siy
Chlorine binding site 1 out of 8 in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:28.6
occ:1.00
O A:HOH1489 2.6 33.4 1.0
O A:HOH517 3.1 15.3 1.0
O A:HOH826 3.1 19.1 1.0
NE A:ARG130 3.2 15.0 1.0
NH2 A:ARG130 3.9 21.1 1.0
CE A:MSE209 3.9 14.2 1.0
CZ A:ARG130 4.0 18.1 1.0
CG A:ARG130 4.0 12.6 1.0
CD A:ARG130 4.0 13.7 1.0
CB A:CYS126 4.2 8.2 1.0
CG1 A:VAL123 4.5 10.5 1.0
NE1 A:TRP181 4.5 27.4 1.0
CA A:CYS126 4.5 8.7 1.0
O A:ALA124 4.6 9.2 1.0
N A:CYS126 4.8 8.4 1.0
O A:HOH409 4.9 9.3 1.0
CD1 A:ILE214 4.9 18.1 1.0
CE A:MSE169 4.9 12.9 0.5

Chlorine binding site 2 out of 8 in 3siy

Go back to Chlorine Binding Sites List in 3siy
Chlorine binding site 2 out of 8 in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl402

b:28.9
occ:1.00
O B:HOH531 3.1 15.6 1.0
O B:HOH900 3.1 27.5 1.0
NE B:ARG130 3.2 14.2 1.0
NH2 B:ARG130 3.6 17.4 1.0
CZ B:ARG130 3.9 15.2 1.0
CE B:MSE209 3.9 15.8 1.0
CG B:ARG130 4.1 11.9 1.0
CD B:ARG130 4.2 13.1 1.0
CB B:CYS126 4.3 8.3 1.0
CG1 B:VAL123 4.4 10.6 1.0
O B:ALA124 4.7 8.4 1.0
NE1 B:TRP181 4.7 21.1 1.0
CA B:CYS126 4.7 8.3 1.0
CD1 B:ILE214 4.9 18.0 1.0
CE B:MSE169 4.9 15.9 0.5
CD1 B:LEU212 4.9 24.4 1.0
N B:CYS126 4.9 8.6 1.0

Chlorine binding site 3 out of 8 in 3siy

Go back to Chlorine Binding Sites List in 3siy
Chlorine binding site 3 out of 8 in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl405

b:41.4
occ:1.00
O A:HOH1382 3.4 33.0 1.0
O A:HOH1491 3.4 30.1 1.0
N B:GLY176 3.7 23.5 1.0
CA B:GLY176 3.9 23.1 1.0
O A:HOH1368 4.1 30.6 1.0
C B:GLY176 4.8 22.0 1.0
C B:GLU175 4.9 24.8 1.0

Chlorine binding site 4 out of 8 in 3siy

Go back to Chlorine Binding Sites List in 3siy
Chlorine binding site 4 out of 8 in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl403

b:35.4
occ:1.00
O C:HOH739 3.1 28.5 1.0
O C:HOH606 3.1 17.0 1.0
NE C:ARG130 3.1 20.5 1.0
NH2 C:ARG130 3.8 22.1 1.0
CE C:MSE209 3.9 18.2 1.0
CZ C:ARG130 3.9 21.4 1.0
CG C:ARG130 3.9 15.2 1.0
CD C:ARG130 4.0 17.7 1.0
CB C:CYS126 4.1 9.3 1.0
CA C:CYS126 4.5 9.4 1.0
CG1 C:VAL123 4.6 11.8 1.0
O C:ALA124 4.6 9.8 1.0
N C:CYS126 4.7 8.5 1.0
O C:HOH1408 4.8 24.1 1.0
CD1 C:ILE214 4.9 28.1 1.0
O C:HOH411 4.9 11.4 1.0
NH1 D:ARG104 5.0 14.0 1.0
NH2 D:ARG104 5.0 14.3 1.0

Chlorine binding site 5 out of 8 in 3siy

Go back to Chlorine Binding Sites List in 3siy
Chlorine binding site 5 out of 8 in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl407

b:22.4
occ:1.00
O D:HOH776 3.0 17.9 1.0
NE C:ARG103 3.1 13.9 1.0
O D:HOH981 3.2 25.8 1.0
O D:HOH667 3.2 16.9 1.0
NH2 C:ARG103 3.5 16.2 1.0
CE1 D:HIS129 3.5 23.6 1.0
CZ C:ARG103 3.7 14.1 1.0
CD1 D:PHE8 3.8 12.5 1.0
NE2 D:HIS129 4.0 25.1 1.0
CE1 D:PHE4 4.0 28.1 1.0
CG C:ARG103 4.1 12.8 1.0
CD C:ARG103 4.1 14.7 1.0
CE1 D:PHE8 4.2 14.3 1.0
O D:HOH593 4.4 15.8 1.0
OD1 D:ASP14 4.6 17.6 1.0
CD1 D:PHE4 4.6 27.6 1.0
ND1 D:HIS129 4.7 22.0 1.0
NH2 D:ARG12 4.8 24.5 1.0
CG D:PHE8 4.9 12.4 1.0
O B:HOH748 5.0 33.6 1.0
CA D:PHE8 5.0 13.8 1.0
CZ D:PHE4 5.0 26.9 1.0

Chlorine binding site 6 out of 8 in 3siy

Go back to Chlorine Binding Sites List in 3siy
Chlorine binding site 6 out of 8 in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl404

b:31.1
occ:1.00
O D:HOH1490 2.7 37.5 1.0
O D:HOH608 3.1 17.3 1.0
O D:HOH725 3.1 19.4 1.0
NE D:ARG130 3.2 18.7 1.0
CG D:ARG130 3.8 15.5 1.0
CE D:MSE209 3.9 14.5 1.0
CB D:CYS126 3.9 10.1 1.0
CD D:ARG130 4.0 17.2 1.0
NH2 D:ARG130 4.1 22.7 1.0
CZ D:ARG130 4.1 22.2 1.0
CA D:CYS126 4.3 9.1 1.0
O D:ALA124 4.4 9.3 1.0
N D:CYS126 4.5 8.6 1.0
CG1 D:VAL123 4.6 10.8 1.0
O D:HOH412 4.8 10.2 1.0
NH2 C:ARG104 4.9 12.8 1.0
NH1 C:ARG104 4.9 13.4 1.0
NE1 D:TRP181 4.9 28.4 1.0
CB D:ARG130 4.9 13.9 1.0

Chlorine binding site 7 out of 8 in 3siy

Go back to Chlorine Binding Sites List in 3siy
Chlorine binding site 7 out of 8 in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl406

b:46.5
occ:1.00
CD2 D:HIS129 3.5 21.6 1.0
CG2 D:VAL128 3.9 15.1 1.0
NE2 D:HIS129 3.9 25.1 1.0
O D:VAL128 4.2 14.4 1.0
C D:VAL128 4.3 13.6 1.0
CB D:VAL128 4.3 14.2 1.0
CB D:ALA132 4.4 16.6 1.0
CG D:HIS129 4.4 19.5 1.0
N D:HIS129 4.5 13.7 1.0
CA D:HIS129 4.5 14.7 1.0
O C:HOH978 4.5 32.7 1.0
CE1 D:HIS129 5.0 23.6 1.0
CA D:VAL128 5.0 13.0 1.0

Chlorine binding site 8 out of 8 in 3siy

Go back to Chlorine Binding Sites List in 3siy
Chlorine binding site 8 out of 8 in the Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of A DUF1989 Family Protein (TM1040_0329) From Silicibacter Sp. TM1040 at 1.35 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl408

b:44.4
occ:1.00
O D:HOH649 2.9 18.9 1.0
O D:HOH872 2.9 25.8 1.0
CB D:PRO39 3.8 9.1 1.0
O D:HOH1081 4.0 31.2 1.0
O D:HOH534 4.5 21.4 1.0
N D:ALA40 4.6 10.2 1.0
CA D:PRO39 4.6 9.5 1.0
NE2 D:GLN42 4.7 11.8 1.0
CG D:PRO39 4.7 11.0 1.0
O D:ALA40 4.9 10.7 1.0
O D:HOH1218 4.9 27.7 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Dec 12 10:10:04 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy