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Chlorine in PDB 3sn0: Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium and Fumarate

Protein crystallography data

The structure of Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium and Fumarate, PDB code: 3sn0 was solved by J.B.Bonanno, Y.Patskovsky, R.Toro, M.Dickey, K.T.Bain, B.Wu, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center For Structuralgenomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.80
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 104.750, 104.750, 144.885, 90.00, 90.00, 90.00
R / Rfree (%) 14.3 / 16.5

Other elements in 3sn0:

The structure of Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium and Fumarate also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium and Fumarate (pdb code 3sn0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium and Fumarate, PDB code: 3sn0:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3sn0

Go back to Chlorine Binding Sites List in 3sn0
Chlorine binding site 1 out of 2 in the Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium and Fumarate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium and Fumarate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:17.1
occ:1.00
O A:HOH876 3.1 18.3 1.0
O A:HOH691 3.3 14.7 1.0
N A:ALA186 3.3 13.4 1.0
C A:GLN184 3.3 15.7 1.0
N A:PRO185 3.4 15.1 1.0
CA A:GLN184 3.5 17.1 1.0
CB A:ALA186 3.5 13.6 1.0
CD A:PRO185 3.5 16.1 1.0
CB A:GLN184 3.8 18.2 1.0
O A:GLN184 3.8 14.9 1.0
CA A:ALA186 4.0 13.3 1.0
C A:PRO185 4.3 13.6 1.0
CA A:PRO185 4.4 14.1 1.0
CG A:PRO185 4.4 15.1 1.0
CG A:GLN184 4.6 22.7 1.0
O A:HOH611 4.7 30.1 1.0
N A:LEU187 4.7 12.6 1.0
O A:HOH806 4.8 27.9 1.0
N A:GLN184 4.8 16.8 1.0
C A:ALA186 4.8 13.4 1.0
ND2 A:ASN188 4.9 11.6 1.0

Chlorine binding site 2 out of 2 in 3sn0

Go back to Chlorine Binding Sites List in 3sn0
Chlorine binding site 2 out of 2 in the Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium and Fumarate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium and Fumarate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:19.3
occ:1.00
O A:HOH726 3.1 18.9 1.0
N A:GLY391 3.2 22.0 1.0
O A:HOH608 3.2 20.0 1.0
N A:ASN17 3.2 16.5 1.0
CA A:GLY38 3.5 18.6 1.0
CA A:ARG16 3.7 16.5 1.0
CB A:ARG16 3.7 16.3 1.0
N A:GLY38 3.7 18.4 1.0
CG A:MSE390 3.8 26.8 1.0
C A:GLY391 3.8 21.7 1.0
CA A:GLY391 3.9 21.8 1.0
C A:ARG16 3.9 16.6 1.0
CA A:MSE390 4.0 23.1 1.0
N A:GLY392 4.1 21.1 1.0
C A:MSE390 4.1 22.7 1.0
O A:GLY391 4.2 21.4 1.0
CA A:ASN17 4.2 16.6 1.0
ND2 A:ASN17 4.3 16.7 1.0
CB A:ASN17 4.3 16.4 1.0
O A:ASN17 4.3 16.8 1.0
CB A:MSE390 4.5 24.1 1.0
CG A:ASN17 4.5 16.7 1.0
O A:HOH606 4.5 27.0 1.0
C A:GLU37 4.6 18.2 1.0
CA A:GLY392 4.7 21.6 1.0
C A:ASN17 4.8 16.1 1.0
C A:GLY38 5.0 18.6 1.0
NE2 A:HIS19 5.0 17.6 1.0

Reference:

J.B.Bonanno, Y.Patskovsky, R.Toro, M.Dickey, K.T.Bain, B.Wu, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium and Fumarate To Be Published.
Page generated: Sat Dec 12 10:10:25 2020

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