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Chlorine in PDB 3so5: Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution

Protein crystallography data

The structure of Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution, PDB code: 3so5 was solved by Joint Center For Structural Genomics (Jcsg), Partnership For Stem Cellbiology (Stemcell), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.35 / 1.70
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 63.634, 63.634, 113.405, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 21.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution (pdb code 3so5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution, PDB code: 3so5:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3so5

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Chlorine binding site 1 out of 4 in the Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl2003

b:30.9
occ:1.00
O A:HOH2037 3.0 29.5 1.0
N A:GLU506 3.1 23.9 1.0
N A:THR519 3.2 20.1 1.0
CA A:PHE518 3.6 16.3 1.0
CA A:PRO505 3.7 21.6 1.0
NE2 A:GLN508 3.8 32.0 1.0
C A:PRO505 3.8 26.1 1.0
C A:PHE518 3.9 20.8 1.0
CG2 A:THR519 3.9 22.1 1.0
O A:THR519 4.0 21.4 1.0
CD1 A:PHE518 4.1 23.4 1.0
CA A:GLU506 4.1 25.0 1.0
CB A:GLU506 4.1 26.6 1.0
O A:GLU506 4.2 26.9 1.0
O A:SER517 4.2 21.1 1.0
CA A:THR519 4.2 18.5 1.0
CB A:PHE518 4.3 16.9 1.0
CB A:PRO505 4.3 22.1 1.0
CB A:THR519 4.5 20.9 1.0
O B:HOH2130 4.6 38.5 1.0
C A:THR519 4.6 21.6 1.0
CG A:PHE518 4.6 19.6 1.0
C A:GLU506 4.6 29.7 1.0
N A:PHE518 4.7 17.7 1.0
O B:HOH2036 4.7 29.0 1.0
O A:GLN504 4.7 23.3 1.0
C A:SER517 4.9 22.4 1.0
CD A:GLN508 4.9 37.6 1.0
N A:PRO505 4.9 21.8 1.0

Chlorine binding site 2 out of 4 in 3so5

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Chlorine binding site 2 out of 4 in the Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl2005

b:60.7
occ:1.00
CH2 A:MLY594 3.3 50.3 1.0
CA A:ASP537 3.4 31.1 1.0
O A:HOH2015 3.7 39.4 1.0
CB A:MLY578 3.8 32.2 1.0
C A:ASP537 3.8 38.3 1.0
CD A:MLY578 3.8 36.4 1.0
CD A:MLY594 3.9 40.4 1.0
N A:ASN538 3.9 34.8 1.0
NZ A:MLY594 4.0 48.4 1.0
CE A:MLY594 4.0 43.3 1.0
OD1 A:ASP537 4.0 40.3 1.0
ND2 A:ASN538 4.0 66.0 1.0
OD1 A:ASN538 4.0 58.0 1.0
CG A:ASN538 4.1 65.8 1.0
CB A:ASP537 4.2 34.1 1.0
N A:ASP537 4.3 28.5 1.0
CG A:MLY578 4.3 34.6 1.0
O A:ASP537 4.6 40.4 1.0
CG A:ASP537 4.6 41.1 1.0
O A:MLY578 4.6 31.6 1.0
CB A:ASN538 4.9 35.1 1.0
CA A:MLY578 4.9 30.6 1.0
CA A:ASN538 4.9 36.5 1.0

Chlorine binding site 3 out of 4 in 3so5

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Chlorine binding site 3 out of 4 in the Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl2006

b:44.0
occ:1.00
NZ A:MLY498 3.4 48.5 1.0
CH1 A:MLY498 3.9 49.3 1.0
CH2 A:MLY498 4.2 48.0 1.0
CE A:MLY498 4.3 45.0 1.0

Chlorine binding site 4 out of 4 in 3so5

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Chlorine binding site 4 out of 4 in the Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl2004

b:27.7
occ:1.00
O B:HOH2109 3.2 41.2 1.0
N B:GLU506 3.2 30.4 1.0
N B:THR519 3.4 24.5 1.0
O B:HOH2144 3.4 34.0 1.0
NE2 B:GLN508 3.6 45.5 1.0
CA B:PHE518 3.7 26.7 1.0
CA B:PRO505 3.9 29.6 1.0
C B:PHE518 4.0 28.5 1.0
CB B:GLU506 4.1 31.8 1.0
C B:PRO505 4.1 33.1 1.0
O B:SER517 4.1 31.1 1.0
O B:GLU506 4.1 39.8 1.0
O B:THR519 4.1 29.6 1.0
CD1 B:PHE518 4.1 37.0 1.0
CA B:GLU506 4.2 31.7 1.0
CA B:THR519 4.4 22.6 1.0
CB B:PHE518 4.4 30.0 1.0
CB B:THR519 4.5 31.9 1.0
CB B:PRO505 4.5 32.4 1.0
OG1 B:THR519 4.6 31.9 1.0
CD B:GLN508 4.6 60.4 1.0
C B:GLU506 4.6 39.2 1.0
CG B:PHE518 4.7 34.2 1.0
N B:PHE518 4.7 27.5 1.0
C B:THR519 4.7 27.6 1.0
C B:SER517 4.8 32.4 1.0
O B:GLN504 4.9 31.6 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Partnership For Stem Cell Biology (Stemcell). Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution To Be Published.
Page generated: Sun Jul 21 04:40:49 2024

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