Chlorine in PDB 3so5: Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution
Protein crystallography data
The structure of Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution, PDB code: 3so5
was solved by
Joint Center For Structural Genomics (Jcsg),
Partnership For Stem Cellbiology (Stemcell),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
28.35 /
1.70
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
63.634,
63.634,
113.405,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
20.6 /
21.6
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution
(pdb code 3so5). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution, PDB code: 3so5:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 3so5
Go back to
Chlorine Binding Sites List in 3so5
Chlorine binding site 1 out
of 4 in the Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl2003
b:30.9
occ:1.00
|
O
|
A:HOH2037
|
3.0
|
29.5
|
1.0
|
N
|
A:GLU506
|
3.1
|
23.9
|
1.0
|
N
|
A:THR519
|
3.2
|
20.1
|
1.0
|
CA
|
A:PHE518
|
3.6
|
16.3
|
1.0
|
CA
|
A:PRO505
|
3.7
|
21.6
|
1.0
|
NE2
|
A:GLN508
|
3.8
|
32.0
|
1.0
|
C
|
A:PRO505
|
3.8
|
26.1
|
1.0
|
C
|
A:PHE518
|
3.9
|
20.8
|
1.0
|
CG2
|
A:THR519
|
3.9
|
22.1
|
1.0
|
O
|
A:THR519
|
4.0
|
21.4
|
1.0
|
CD1
|
A:PHE518
|
4.1
|
23.4
|
1.0
|
CA
|
A:GLU506
|
4.1
|
25.0
|
1.0
|
CB
|
A:GLU506
|
4.1
|
26.6
|
1.0
|
O
|
A:GLU506
|
4.2
|
26.9
|
1.0
|
O
|
A:SER517
|
4.2
|
21.1
|
1.0
|
CA
|
A:THR519
|
4.2
|
18.5
|
1.0
|
CB
|
A:PHE518
|
4.3
|
16.9
|
1.0
|
CB
|
A:PRO505
|
4.3
|
22.1
|
1.0
|
CB
|
A:THR519
|
4.5
|
20.9
|
1.0
|
O
|
B:HOH2130
|
4.6
|
38.5
|
1.0
|
C
|
A:THR519
|
4.6
|
21.6
|
1.0
|
CG
|
A:PHE518
|
4.6
|
19.6
|
1.0
|
C
|
A:GLU506
|
4.6
|
29.7
|
1.0
|
N
|
A:PHE518
|
4.7
|
17.7
|
1.0
|
O
|
B:HOH2036
|
4.7
|
29.0
|
1.0
|
O
|
A:GLN504
|
4.7
|
23.3
|
1.0
|
C
|
A:SER517
|
4.9
|
22.4
|
1.0
|
CD
|
A:GLN508
|
4.9
|
37.6
|
1.0
|
N
|
A:PRO505
|
4.9
|
21.8
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 3so5
Go back to
Chlorine Binding Sites List in 3so5
Chlorine binding site 2 out
of 4 in the Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl2005
b:60.7
occ:1.00
|
CH2
|
A:MLY594
|
3.3
|
50.3
|
1.0
|
CA
|
A:ASP537
|
3.4
|
31.1
|
1.0
|
O
|
A:HOH2015
|
3.7
|
39.4
|
1.0
|
CB
|
A:MLY578
|
3.8
|
32.2
|
1.0
|
C
|
A:ASP537
|
3.8
|
38.3
|
1.0
|
CD
|
A:MLY578
|
3.8
|
36.4
|
1.0
|
CD
|
A:MLY594
|
3.9
|
40.4
|
1.0
|
N
|
A:ASN538
|
3.9
|
34.8
|
1.0
|
NZ
|
A:MLY594
|
4.0
|
48.4
|
1.0
|
CE
|
A:MLY594
|
4.0
|
43.3
|
1.0
|
OD1
|
A:ASP537
|
4.0
|
40.3
|
1.0
|
ND2
|
A:ASN538
|
4.0
|
66.0
|
1.0
|
OD1
|
A:ASN538
|
4.0
|
58.0
|
1.0
|
CG
|
A:ASN538
|
4.1
|
65.8
|
1.0
|
CB
|
A:ASP537
|
4.2
|
34.1
|
1.0
|
N
|
A:ASP537
|
4.3
|
28.5
|
1.0
|
CG
|
A:MLY578
|
4.3
|
34.6
|
1.0
|
O
|
A:ASP537
|
4.6
|
40.4
|
1.0
|
CG
|
A:ASP537
|
4.6
|
41.1
|
1.0
|
O
|
A:MLY578
|
4.6
|
31.6
|
1.0
|
CB
|
A:ASN538
|
4.9
|
35.1
|
1.0
|
CA
|
A:MLY578
|
4.9
|
30.6
|
1.0
|
CA
|
A:ASN538
|
4.9
|
36.5
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 3so5
Go back to
Chlorine Binding Sites List in 3so5
Chlorine binding site 3 out
of 4 in the Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl2006
b:44.0
occ:1.00
|
NZ
|
A:MLY498
|
3.4
|
48.5
|
1.0
|
CH1
|
A:MLY498
|
3.9
|
49.3
|
1.0
|
CH2
|
A:MLY498
|
4.2
|
48.0
|
1.0
|
CE
|
A:MLY498
|
4.3
|
45.0
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 3so5
Go back to
Chlorine Binding Sites List in 3so5
Chlorine binding site 4 out
of 4 in the Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl2004
b:27.7
occ:1.00
|
O
|
B:HOH2109
|
3.2
|
41.2
|
1.0
|
N
|
B:GLU506
|
3.2
|
30.4
|
1.0
|
N
|
B:THR519
|
3.4
|
24.5
|
1.0
|
O
|
B:HOH2144
|
3.4
|
34.0
|
1.0
|
NE2
|
B:GLN508
|
3.6
|
45.5
|
1.0
|
CA
|
B:PHE518
|
3.7
|
26.7
|
1.0
|
CA
|
B:PRO505
|
3.9
|
29.6
|
1.0
|
C
|
B:PHE518
|
4.0
|
28.5
|
1.0
|
CB
|
B:GLU506
|
4.1
|
31.8
|
1.0
|
C
|
B:PRO505
|
4.1
|
33.1
|
1.0
|
O
|
B:SER517
|
4.1
|
31.1
|
1.0
|
O
|
B:GLU506
|
4.1
|
39.8
|
1.0
|
O
|
B:THR519
|
4.1
|
29.6
|
1.0
|
CD1
|
B:PHE518
|
4.1
|
37.0
|
1.0
|
CA
|
B:GLU506
|
4.2
|
31.7
|
1.0
|
CA
|
B:THR519
|
4.4
|
22.6
|
1.0
|
CB
|
B:PHE518
|
4.4
|
30.0
|
1.0
|
CB
|
B:THR519
|
4.5
|
31.9
|
1.0
|
CB
|
B:PRO505
|
4.5
|
32.4
|
1.0
|
OG1
|
B:THR519
|
4.6
|
31.9
|
1.0
|
CD
|
B:GLN508
|
4.6
|
60.4
|
1.0
|
C
|
B:GLU506
|
4.6
|
39.2
|
1.0
|
CG
|
B:PHE518
|
4.7
|
34.2
|
1.0
|
N
|
B:PHE518
|
4.7
|
27.5
|
1.0
|
C
|
B:THR519
|
4.7
|
27.6
|
1.0
|
C
|
B:SER517
|
4.8
|
32.4
|
1.0
|
O
|
B:GLN504
|
4.9
|
31.6
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Partnership For Stem Cell Biology (Stemcell).
Crystal Structure of An Immunoglobulin I-Set Domain of LRIG3 Protein (LRIG3) From Mus Musculus at 1.70 A Resolution To Be Published.
Page generated: Sun Jul 21 04:40:49 2024
|