Chlorine in PDB 3sp1: Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi

Enzymatic activity of Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi

All present enzymatic activity of Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi:
6.1.1.16;

Protein crystallography data

The structure of Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi, PDB code: 3sp1 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	50.00 / 2.55
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	62.620, 49.890, 179.630, 90.00, 93.18, 90.00
*R / R_free (%)*	22.4 / 27.4

Other elements in 3sp1:

The structure of Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi (pdb code 3sp1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi, PDB code: 3sp1:

Chlorine binding site 1 out of 1 in 3sp1

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Chlorine Binding Sites List in 3sp1

Chlorine binding site 1 out of 1 in the Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Cl483 b:57.8 occ:1.00	O	B:CYS306	3.5	18.2	1.0
	O	B:HOH517	3.8	13.8	1.0
	CB	B:CYS306	3.8	16.7	1.0
	NE	B:ARG41	3.9	20.1	1.0
	C	B:CYS306	4.1	17.9	1.0
	O	B:SER309	4.1	28.2	1.0
	O	B:ARG41	4.2	18.5	1.0
	CB	B:PHE45	4.3	18.1	1.0
	CD1	B:LEU48	4.3	15.6	1.0
	CG2	B:ILE44	4.3	16.8	1.0
	CA	B:CYS306	4.3	17.3	1.0
	N	B:PHE45	4.3	16.9	1.0
	O	B:HOH488	4.3	19.1	1.0
	CA	B:PHE45	4.3	17.5	1.0
	NH1	B:ARG41	4.5	21.9	1.0
	CZ	B:ARG41	4.6	21.1	1.0
	CD	B:ARG41	4.6	19.7	1.0
	CG	B:ARG41	4.7	19.4	1.0
	SG	B:CYS306	4.7	15.8	1.0
	CB	B:TYR311	4.8	24.6	1.0
	CA	B:TYR311	4.8	25.6	1.0
	CB	B:ILE44	4.8	16.4	1.0
	C	B:ILE44	4.8	16.6	1.0

Reference:

S.O.Moen, T.E.Edwards, D.M.Dranow, M.C.Clifton, B.Sankaran, W.C.Van Voorhis, A.Sharma, C.Manoil, B.L.Staker, P.J.Myler, D.D.Lorimer. Ligand Co-Crystallization of Aminoacyl-Trna Synthetases From Infectious Disease Organisms. Sci Rep V. 7 223 2017.
ISSN: ESSN 2045-2322
PubMed: 28303005
DOI: 10.1038/S41598-017-00367-6

Page generated: Sun Jul 21 04:42:15 2024

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