Atomistry » Chlorine » PDB 3sml-3ste » 3stc
Atomistry »
  Chlorine »
    PDB 3sml-3ste »
      3stc »

Chlorine in PDB 3stc: Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis

Enzymatic activity of Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis

All present enzymatic activity of Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis:
2.5.1.55;

Protein crystallography data

The structure of Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis, PDB code: 3stc was solved by T.M.Allison, G.B.Jameson, E.J.Parker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.56 / 1.91
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 81.780, 85.760, 163.220, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 24.5

Other elements in 3stc:

The structure of Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis (pdb code 3stc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis, PDB code: 3stc:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 3stc

Go back to Chlorine Binding Sites List in 3stc
Chlorine binding site 1 out of 7 in the Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl270

b:44.8
occ:1.00
 N A:GLN138 3.2 29.5 1.0
CG A:GLN138 3.4 32.0 1.0
CE2 A:PHE114 3.4 48.5 1.0
NE2 A:GLN138 3.6 39.8 1.0
CD2 A:PHE114 3.6 46.7 1.0
CB A:ALA113 3.7 33.2 1.0
CB A:GLN138 3.8 30.8 1.0
CA A:PRO137 3.9 30.0 1.0
C A:PRO137 4.0 29.0 1.0
CD A:GLN138 4.0 35.3 1.0
CA A:GLN138 4.1 30.4 1.0
NE A:ARG165 4.1 49.9 1.0
CD A:ARG165 4.1 40.6 1.0
CZ A:ARG165 4.4 50.6 1.0
CB A:PRO137 4.5 32.2 1.0
NH2 A:ARG165 4.6 55.9 1.0
CE1 A:PHE139 4.6 43.5 1.0
CD1 A:PHE139 4.7 42.4 1.0
C A:ALA113 4.7 35.5 1.0
CZ A:PHE114 4.7 48.9 1.0
N A:PHE114 4.8 35.6 1.0
CA A:ALA113 4.9 31.8 1.0
O A:ALA113 4.9 34.0 1.0
O A:LYS136 5.0 26.9 1.0
NH1 A:ARG165 5.0 49.6 1.0

Chlorine binding site 2 out of 7 in 3stc

Go back to Chlorine Binding Sites List in 3stc
Chlorine binding site 2 out of 7 in the Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl270

b:30.5
occ:1.00
 NH1 B:ARG165 3.1 32.0 1.0
N B:GLN138 3.2 20.0 1.0
CG B:GLN138 3.4 23.7 1.0
CA B:PRO137 3.6 19.4 1.0
NH2 B:ARG165 3.6 32.5 1.0
CB B:ALA113 3.8 17.8 1.0
CZ B:ARG165 3.8 31.4 1.0
C B:PRO137 3.9 19.5 1.0
NE2 B:GLN138 3.9 29.3 1.0
CB B:GLN138 3.9 22.1 1.0
CB B:PRO137 4.1 19.1 1.0
CA B:GLN138 4.2 21.6 1.0
CD B:GLN138 4.2 27.8 1.0
O D:HOH686 4.6 29.2 1.0
O B:LYS136 4.8 18.4 1.0
N B:PRO137 4.8 18.6 1.0
CD2 B:PHE139 5.0 30.7 1.0

Chlorine binding site 3 out of 7 in 3stc

Go back to Chlorine Binding Sites List in 3stc
Chlorine binding site 3 out of 7 in the Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl271

b:25.7
occ:0.67
 O B:HOH674 1.8 18.8 0.3
NZ B:LYS135 2.9 35.1 1.0
NE2 B:GLN110 3.3 26.2 1.0
CZ B:PHE223 3.3 19.7 1.0
O B:HOH660 3.5 28.4 1.0
CE2 B:PHE223 3.6 19.2 1.0
NZ B:LYS52 3.7 19.5 1.0
O B:HOH310 3.8 32.0 1.0
CE B:LYS135 3.8 31.9 1.0
CD B:LYS52 4.0 18.3 1.0
O B:HOH272 4.2 30.1 1.0
CE B:LYS52 4.2 18.4 1.0
O B:HOH661 4.2 42.9 1.0
CD B:GLN110 4.4 22.8 1.0
CG B:GLU225 4.5 34.4 1.0
CE1 B:PHE223 4.6 19.6 1.0
O B:HOH311 4.6 17.9 1.0
OE1 B:GLN110 4.6 20.9 1.0
CG B:LYS52 4.7 17.2 1.0
OE1 B:GLU225 4.7 32.6 1.0
O B:HOH491 4.8 43.8 1.0
CD B:GLU225 4.8 36.0 1.0
CD B:LYS135 4.9 29.0 1.0
CD2 B:PHE223 5.0 18.9 1.0

Chlorine binding site 4 out of 7 in 3stc

Go back to Chlorine Binding Sites List in 3stc
Chlorine binding site 4 out of 7 in the Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl270

b:34.0
occ:1.00
 N C:GLN138 3.3 25.0 1.0
NE2 C:GLN138 3.3 32.0 1.0
CG C:GLN138 3.4 29.1 1.0
NE C:ARG165 3.5 42.2 1.0
CB C:ALA113 3.6 25.2 1.0
NH2 C:ARG165 3.8 44.8 1.0
CD C:GLN138 3.9 31.9 1.0
CA C:PRO137 3.9 24.2 1.0
CZ C:ARG165 3.9 42.0 1.0
CB C:GLN138 3.9 27.1 1.0
C C:PRO137 4.1 23.6 1.0
CA C:GLN138 4.2 25.6 1.0
CD C:ARG165 4.3 32.9 1.0
CB C:PRO137 4.5 25.0 1.0
CE1 C:PHE139 4.7 40.5 1.0
CD1 C:PHE139 4.8 39.1 1.0
NH1 C:ARG165 4.9 40.3 1.0
CA C:ALA113 4.9 25.1 1.0
C C:ALA113 4.9 25.8 1.0
O C:LYS136 5.0 22.7 1.0

Chlorine binding site 5 out of 7 in 3stc

Go back to Chlorine Binding Sites List in 3stc
Chlorine binding site 5 out of 7 in the Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl271

b:27.2
occ:1.00
 NE2 C:GLN110 3.3 20.5 1.0
NZ C:LYS135 3.3 28.0 1.0
CE1 C:HIS199 3.5 22.8 1.0
CZ C:PHE223 3.6 21.7 1.0
CE2 C:PHE223 3.7 21.7 1.0
CE C:LYS135 3.7 28.1 1.0
CE C:LYS52 3.7 24.1 1.0
NZ C:LYS52 3.8 24.8 1.0
OE2 C:GLU225 3.9 26.0 1.0
ND1 C:HIS199 4.0 21.9 1.0
O C:HOH326 4.3 29.1 1.0
CD C:GLN110 4.3 20.3 1.0
OE1 C:GLN110 4.6 19.9 1.0
NE2 C:HIS199 4.6 23.5 1.0
NZ C:LYS57 4.6 58.9 1.0
CD C:LYS52 4.6 22.9 1.0
OD2 C:ASP196 4.7 20.3 1.0
CE1 C:PHE223 4.8 21.0 1.0
O C:HOH394 4.9 33.0 1.0
OG C:SER54 4.9 21.6 0.5

Chlorine binding site 6 out of 7 in 3stc

Go back to Chlorine Binding Sites List in 3stc
Chlorine binding site 6 out of 7 in the Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl270

b:40.9
occ:1.00
 NE2 D:GLN138 2.7 30.7 1.0
NH2 D:ARG165 2.9 41.8 1.0
N D:GLN138 3.1 21.5 1.0
CG D:GLN138 3.3 26.8 1.0
CD D:GLN138 3.5 31.4 1.0
CB D:ALA113 3.6 25.1 1.0
CB D:GLN138 3.7 24.4 1.0
CE1 D:PHE114 3.8 37.5 1.0
CA D:PRO137 3.9 21.3 1.0
CD1 D:PHE114 3.9 39.1 1.0
C D:PRO137 4.0 20.8 1.0
CZ D:ARG165 4.0 40.0 1.0
CA D:GLN138 4.0 21.4 1.0
CD D:ARG165 4.2 32.7 1.0
O D:HOH547 4.4 42.6 1.0
CB D:PRO137 4.5 21.5 1.0
NE D:ARG165 4.5 39.6 1.0
CE1 D:PHE139 4.5 29.1 1.0
CD1 D:PHE139 4.6 27.3 1.0
C D:ALA113 4.7 30.4 1.0
OE1 D:GLN138 4.7 35.0 1.0
O D:HOH420 4.7 34.3 1.0
CA D:ALA113 4.8 28.0 1.0
N D:PHE114 4.9 30.3 1.0
O D:LYS136 4.9 19.0 1.0
O D:ALA113 5.0 31.3 1.0
NH1 D:ARG165 5.0 40.9 1.0

Chlorine binding site 7 out of 7 in 3stc

Go back to Chlorine Binding Sites List in 3stc
Chlorine binding site 7 out of 7 in the Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl271

b:32.6
occ:1.00
 NE2 D:GLN110 3.3 24.5 1.0
NZ D:LYS135 3.3 33.9 1.0
O D:HOH552 3.4 45.4 1.0
CE1 D:HIS199 3.4 33.3 1.0
CZ D:PHE223 3.6 22.4 1.0
NZ D:LYS52 3.6 32.9 1.0
CE D:LYS52 3.7 33.6 1.0
CE2 D:PHE223 3.9 22.5 1.0
CE D:LYS135 3.9 29.3 1.0
OE2 D:GLU225 3.9 33.8 1.0
ND1 D:HIS199 4.1 29.5 1.0
NE2 D:HIS199 4.2 33.9 1.0
O D:HOH665 4.4 25.4 1.0
CD D:GLN110 4.4 25.9 1.0
OD2 D:ASP196 4.6 21.1 1.0
OE1 D:GLN110 4.6 24.2 1.0
CD D:LYS52 4.7 31.9 1.0
CE1 D:PHE223 4.8 22.3 1.0
OG D:SER54 4.9 37.8 1.0
O D:HOH292 5.0 28.5 1.0
O D:HOH276 5.0 20.2 1.0

Reference:

T.M.Allison, R.D.Hutton, W.Jiao, B.J.Gloyne, E.B.Nimmo, G.B.Jameson, E.J.Parker. An Extended (Beta)7(Alpha)7 Substrate-Binding Loop Is Essential For Efficient Catalysis By 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase Biochemistry V. 50 9318 2011.
ISSN: ISSN 0006-2960
PubMed: 21942786
DOI: 10.1021/BI201231E
Page generated: Sun Jul 21 04:46:50 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy