Chlorine in PDB 3str: Strep Peptide Deformylase with A Time Dependent Thiazolidine Hydroxamic Acid

Enzymatic activity of Strep Peptide Deformylase with A Time Dependent Thiazolidine Hydroxamic Acid

All present enzymatic activity of Strep Peptide Deformylase with A Time Dependent Thiazolidine Hydroxamic Acid:
3.5.1.88;

Protein crystallography data

The structure of Strep Peptide Deformylase with A Time Dependent Thiazolidine Hydroxamic Acid, PDB code: 3str was solved by N.Campobasso, P.Ward, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	26.07 / 1.75
*Space group*	P 4₃
*Cell size a, b, c (Å), α, β, γ (°)*	50.274, 50.274, 91.486, 90.00, 90.00, 90.00
*R / R_free (%)*	19.2 / 23

Other elements in 3str:

The structure of Strep Peptide Deformylase with A Time Dependent Thiazolidine Hydroxamic Acid also contains other interesting chemical elements:

Nickel

(Ni)

1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Strep Peptide Deformylase with A Time Dependent Thiazolidine Hydroxamic Acid (pdb code 3str). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Strep Peptide Deformylase with A Time Dependent Thiazolidine Hydroxamic Acid, PDB code: 3str:

Chlorine binding site 1 out of 1 in 3str

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Chlorine Binding Sites List in 3str

Chlorine binding site 1 out of 1 in the Strep Peptide Deformylase with A Time Dependent Thiazolidine Hydroxamic Acid

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Strep Peptide Deformylase with A Time Dependent Thiazolidine Hydroxamic Acid within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
P:Cl209 b:40.1 occ:1.00	CL31	P:3LI209	0.0	40.1	1.0
	C30	P:3LI209	1.7	33.0	1.0
	C29	P:3LI209	2.7	37.4	1.0
	C25	P:3LI209	2.7	34.9	1.0
	N22	P:3LI209	3.0	28.6	1.0
	C23	P:3LI209	3.4	26.1	1.0
	CG1	P:VAL71	3.5	23.1	1.0
	CG	P:GLN57	3.9	21.0	1.0
	C28	P:3LI209	3.9	36.0	1.0
	C26	P:3LI209	3.9	32.0	1.0
	CD	P:GLN57	4.0	24.5	1.0
	CG	P:PRO90	4.1	31.8	1.0
	NE2	P:GLN57	4.2	21.3	1.0
	C21	P:3LI209	4.3	30.3	1.0
	CD	P:PRO90	4.3	32.4	1.0
	C24	P:3LI209	4.3	27.9	1.0
	C27	P:3LI209	4.4	38.7	1.0
	OE1	P:GLN57	4.5	25.2	1.0
	O	P:GLY70	4.7	20.4	1.0
	CB	P:GLN57	4.7	25.0	1.0
	CB	P:VAL71	5.0	21.6	1.0

Reference:

R.Totoritis, C.Duraiswami, A.N.Taylor, J.J.Kerrigan, N.Campobasso, K.J.Smith, P.Ward, B.W.King, M.Murrayz-Thompson, A.D.Jones, G.S.Van Aller, K.M.Aubart, M.Zalacain, S.H.Thrall, T.D.Meek, B.Schwartz. Understanding the Origins of Time-Dependent Inhibition By Polypeptide Deformylase Inhibitors. Biochemistry V. 50 6642 2011.
ISSN: ISSN 0006-2960
PubMed: 21711014
DOI: 10.1021/BI200655G

Page generated: Fri Jul 11 10:29:16 2025

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