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Chlorine in PDB 3t6u: Crystal Structure of Lysozyme in 40% Sucrose

Enzymatic activity of Crystal Structure of Lysozyme in 40% Sucrose

All present enzymatic activity of Crystal Structure of Lysozyme in 40% Sucrose:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Lysozyme in 40% Sucrose, PDB code: 3t6u was solved by P.Sharma, S.Singh, Ashish, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.53 / 2.21
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.614, 77.614, 37.483, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 21.8

Other elements in 3t6u:

The structure of Crystal Structure of Lysozyme in 40% Sucrose also contains other interesting chemical elements:

Sodium (Na) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Lysozyme in 40% Sucrose (pdb code 3t6u). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Crystal Structure of Lysozyme in 40% Sucrose, PDB code: 3t6u:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 3t6u

Go back to Chlorine Binding Sites List in 3t6u
Chlorine binding site 1 out of 7 in the Crystal Structure of Lysozyme in 40% Sucrose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Lysozyme in 40% Sucrose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl131

b:34.9
occ:1.00
 ND2 A:ASN113 3.3 35.0 1.0
CB A:ASN113 3.5 29.4 1.0
CA A:ALA110 3.8 29.8 1.0
CG A:ASN113 3.9 33.5 1.0
O A:VAL109 3.9 32.6 1.0
CG1 A:VAL109 4.0 35.4 1.0
N A:ALA110 4.2 28.8 1.0
C A:VAL109 4.2 29.9 1.0
CB A:ALA110 4.3 29.9 1.0
CG A:ARG114 4.4 29.0 1.0
CD A:ARG114 4.4 31.2 1.0
C A:ALA110 4.8 33.3 1.0
CA A:ASN113 4.8 31.2 1.0
O A:ALA110 4.9 32.5 1.0
CB A:VAL109 5.0 35.8 1.0

Chlorine binding site 2 out of 7 in 3t6u

Go back to Chlorine Binding Sites List in 3t6u
Chlorine binding site 2 out of 7 in the Crystal Structure of Lysozyme in 40% Sucrose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Lysozyme in 40% Sucrose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl132

b:43.3
occ:1.00
 NH2 A:ARG14 3.5 37.1 1.0
N A:ILE88 3.5 33.1 1.0
CG1 A:ILE88 3.6 34.3 1.0
CE1 A:HIS15 4.0 34.4 1.0
OD1 A:ASP87 4.1 34.9 1.0
CA A:ASP87 4.1 37.3 1.0
O A:SER86 4.1 31.8 1.0
CB A:ALA11 4.2 29.1 1.0
CZ A:PHE3 4.2 31.9 1.0
CG2 A:ILE88 4.3 33.2 1.0
C A:ASP87 4.3 35.7 1.0
CB A:ILE88 4.3 34.2 1.0
CD1 A:ILE88 4.4 31.1 1.0
CA A:ILE88 4.4 32.8 1.0
CZ A:ARG14 4.7 39.2 1.0
ND1 A:HIS15 4.7 36.7 1.0
CE2 A:PHE3 4.7 33.8 1.0
CG A:ASP87 4.8 39.5 1.0
CB A:ASP87 4.9 38.0 1.0
NE2 A:HIS15 4.9 33.7 1.0
C A:SER86 5.0 33.7 1.0
N A:THR89 5.0 30.9 1.0

Chlorine binding site 3 out of 7 in 3t6u

Go back to Chlorine Binding Sites List in 3t6u
Chlorine binding site 3 out of 7 in the Crystal Structure of Lysozyme in 40% Sucrose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Lysozyme in 40% Sucrose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl133

b:42.8
occ:1.00
 N A:GLU7 3.1 31.9 1.0
CA A:GLY4 3.3 33.2 1.0
C A:GLY4 3.3 34.0 1.0
N A:CYS6 3.5 32.2 1.0
CB A:GLU7 3.6 31.5 1.0
N A:ARG5 3.7 30.0 1.0
O A:GLY4 3.8 35.1 1.0
CA A:GLU7 3.9 29.3 1.0
C A:CYS6 3.9 31.8 1.0
CA A:CYS6 4.0 34.6 1.0
CB A:CYS6 4.0 32.1 1.0
C A:ARG5 4.3 35.1 1.0
N A:GLY4 4.3 34.4 1.0
CA A:ARG5 4.5 33.4 1.0

Chlorine binding site 4 out of 7 in 3t6u

Go back to Chlorine Binding Sites List in 3t6u
Chlorine binding site 4 out of 7 in the Crystal Structure of Lysozyme in 40% Sucrose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Lysozyme in 40% Sucrose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl134

b:50.8
occ:1.00
 N A:LYS1 3.1 35.7 1.0
CB A:SER86 3.6 36.8 1.0
N A:SER86 3.9 35.1 1.0
CA A:SER86 4.1 34.4 1.0
CA A:LYS1 4.1 34.4 1.0
OG1 A:THR40 4.1 32.0 1.0
CB A:LYS1 4.2 37.2 1.0
NE2 A:GLN41 4.5 32.8 1.0
O A:LEU84 4.5 34.1 1.0
OG A:SER86 4.5 38.1 1.0
CG A:GLN41 4.6 31.3 1.0
C A:SER85 4.6 32.3 1.0
CD A:GLN41 4.6 30.8 1.0

Chlorine binding site 5 out of 7 in 3t6u

Go back to Chlorine Binding Sites List in 3t6u
Chlorine binding site 5 out of 7 in the Crystal Structure of Lysozyme in 40% Sucrose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Lysozyme in 40% Sucrose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl135

b:45.9
occ:1.00
 N A:THR69 3.1 38.3 1.0
O A:THR69 3.4 38.8 1.0
C A:GLY67 3.4 38.7 1.0
CA A:GLY67 3.5 35.5 1.0
N A:GLY67 3.5 32.6 1.0
N A:ARG68 3.5 36.2 1.0
OD1 A:ASN65 3.6 36.7 1.0
C A:THR69 3.7 40.4 1.0
CA A:THR69 3.8 39.2 1.0
NA A:NA141 4.0 48.1 1.0
O A:GLY67 4.0 39.1 1.0
OG A:SER72 4.0 44.7 1.0
C A:ARG68 4.1 38.0 1.0
CB A:THR69 4.1 35.3 1.0
OD1 A:ASP66 4.2 27.8 1.0
CA A:ARG68 4.3 36.2 1.0
N A:PRO70 4.5 44.8 1.0
C A:ASP66 4.7 31.4 1.0
OG1 A:THR69 4.7 32.0 1.0
CG A:ASN65 4.8 38.4 1.0
N A:ASP66 4.8 30.1 1.0

Chlorine binding site 6 out of 7 in 3t6u

Go back to Chlorine Binding Sites List in 3t6u
Chlorine binding site 6 out of 7 in the Crystal Structure of Lysozyme in 40% Sucrose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Lysozyme in 40% Sucrose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl142

b:68.8
occ:1.00
 NZ A:LYS96 3.3 36.0 1.0
CE A:LYS96 4.2 36.3 1.0
CE2 A:TYR20 4.2 35.3 1.0
CD A:LYS96 4.5 34.4 1.0
CD2 A:TYR20 4.7 33.3 1.0

Chlorine binding site 7 out of 7 in 3t6u

Go back to Chlorine Binding Sites List in 3t6u
Chlorine binding site 7 out of 7 in the Crystal Structure of Lysozyme in 40% Sucrose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Lysozyme in 40% Sucrose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl143

b:77.6
occ:1.00
 O A:LEU75 4.0 37.5 1.0
C A:LEU75 4.6 38.4 1.0
CA A:LEU75 4.6 34.2 1.0
O A:ASN74 4.8 36.0 1.0
CD2 A:LEU75 4.8 38.5 1.0

Reference:

P.Sharma, S.Singh, Ashish. Crystal Structure of Lysozyme in 40% Sucrose To Be Published.
Page generated: Sun Jul 21 05:02:20 2024

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