Chlorine in PDB 3tbd: Crystal Structure of Domain VI and LE1 of Human Netrin-G2

The structure of Crystal Structure of Domain VI and LE1 of Human Netrin-G2, PDB code: 3tbd was solved by J.Brasch, Q.Liu, L.Shapiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.27 / 1.80
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	63.134, 63.134, 190.640, 90.00, 90.00, 120.00
R / Rfree (%)	17.5 / 22.7

The structure of Crystal Structure of Domain VI and LE1 of Human Netrin-G2 also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Chlorine atom in the Crystal Structure of Domain VI and LE1 of Human Netrin-G2 (pdb code 3tbd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Domain VI and LE1 of Human Netrin-G2, PDB code: 3tbd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Domain VI and LE1 of Human Netrin-G2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Domain VI and LE1 of Human Netrin-G2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl341 b:76.0 occ:1.00 NZ A:LYS304 3.0 55.6 1.0 NH1 A:ARG307 3.6 34.8 1.0 NH2 A:ARG307 3.8 32.7 1.0 CZ A:ARG307 4.2 36.5 1.0 CE A:LYS304 4.2 52.0 1.0 NZ A:LYS301 4.4 45.8 1.0 CG A:LYS304 5.0 38.1 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Domain VI and LE1 of Human Netrin-G2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Domain VI and LE1 of Human Netrin-G2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl342 b:30.4 occ:1.00 O A:HOH391 3.1 49.8 1.0 N A:ASP298 3.2 20.4 1.0 N A:GLY300 3.2 19.3 1.0 CD A:PRO297 3.6 28.1 1.0 CA A:GLY300 3.6 18.1 1.0 C A:GLY296 3.6 26.0 1.0 CB A:ASP298 3.7 19.6 1.0 N A:PRO297 3.7 26.6 1.0 CA A:GLY296 3.7 23.8 1.0 CA A:ASP298 3.8 20.0 1.0 N A:CYS299 3.8 18.7 1.0 CG A:PRO297 3.9 29.2 1.0 C A:ASP298 3.9 18.2 1.0 O A:GLY296 4.2 24.5 1.0 C A:PRO297 4.2 24.7 1.0 O A:THR295 4.3 22.2 1.0 CG A:ASP298 4.3 20.8 1.0 C A:GLY300 4.3 22.4 1.0 C A:CYS299 4.3 17.9 1.0 CA A:PRO297 4.5 26.0 1.0 N A:LYS301 4.6 21.7 1.0 CA A:CYS299 4.6 19.2 1.0 OD2 A:ASP298 4.7 23.3 1.0 O A:ASP298 4.7 17.4 1.0 OD1 A:ASP298 4.8 23.1 1.0 N A:GLY296 4.8 23.2 1.0 CB A:PRO297 4.9 26.4 1.0 O A:HOH533 4.9 33.4 1.0 O A:HOH739 4.9 44.4 1.0 C A:THR295 5.0 21.5 1.0

J.Brasch, O.J.Harrison, G.Ahlsen, Q.Liu, L.Shapiro. Crystal Structure of the Ligand Binding Domain of Netrin G2. J.Mol.Biol. V. 414 723 2011.
ISSN: ISSN 0022-2836
PubMed: 22041449
DOI: 10.1016/J.JMB.2011.10.030