Chlorine in PDB 3tdx: Crystal Structure of Hsc L82V
Protein crystallography data
The structure of Crystal Structure of Hsc L82V, PDB code: 3tdx
was solved by
B.K.Czyzewski,
D.-N.Wang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
46.69 /
2.50
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
99.012,
118.661,
151.343,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.2 /
20.8
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Hsc L82V
(pdb code 3tdx). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of Hsc L82V, PDB code: 3tdx:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 3tdx
Go back to
Chlorine Binding Sites List in 3tdx
Chlorine binding site 1 out
of 5 in the Crystal Structure of Hsc L82V
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Hsc L82V within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl268
b:56.4
occ:1.00
|
NE2
|
A:HIS201
|
3.0
|
45.8
|
1.0
|
OG1
|
A:THR84
|
3.0
|
43.5
|
1.0
|
CG1
|
A:VAL167
|
3.6
|
31.0
|
1.0
|
CE1
|
A:HIS201
|
3.7
|
50.3
|
1.0
|
CD1
|
A:LEU72
|
3.7
|
35.1
|
1.0
|
CG1
|
A:VAL82
|
4.1
|
39.3
|
1.0
|
CG2
|
A:VAL82
|
4.1
|
38.8
|
1.0
|
CG2
|
A:VAL167
|
4.1
|
33.4
|
1.0
|
CD2
|
A:HIS201
|
4.1
|
47.0
|
1.0
|
CB
|
A:THR84
|
4.2
|
48.7
|
1.0
|
CD2
|
A:LEU72
|
4.4
|
42.0
|
1.0
|
CG
|
A:LEU72
|
4.4
|
35.1
|
1.0
|
CB
|
A:LEU72
|
4.4
|
32.2
|
1.0
|
CB
|
A:VAL167
|
4.5
|
37.6
|
1.0
|
CG2
|
A:VAL38
|
4.6
|
32.4
|
1.0
|
CB
|
A:VAL82
|
4.7
|
43.6
|
1.0
|
CG2
|
A:THR84
|
4.8
|
44.7
|
1.0
|
ND1
|
A:HIS201
|
4.9
|
48.0
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 3tdx
Go back to
Chlorine Binding Sites List in 3tdx
Chlorine binding site 2 out
of 5 in the Crystal Structure of Hsc L82V
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Hsc L82V within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl267
b:56.4
occ:1.00
|
OG1
|
B:THR84
|
2.9
|
44.8
|
1.0
|
NE2
|
B:HIS201
|
3.0
|
46.4
|
1.0
|
CE1
|
B:HIS201
|
3.6
|
43.9
|
1.0
|
CD1
|
B:LEU72
|
3.7
|
41.4
|
1.0
|
CG1
|
B:VAL167
|
3.7
|
30.4
|
1.0
|
CG1
|
B:VAL82
|
4.0
|
36.4
|
1.0
|
CG2
|
B:VAL82
|
4.1
|
43.3
|
1.0
|
CD2
|
B:HIS201
|
4.1
|
45.5
|
1.0
|
CB
|
B:THR84
|
4.2
|
48.0
|
1.0
|
CG2
|
B:VAL167
|
4.2
|
32.5
|
1.0
|
CB
|
B:LEU72
|
4.3
|
37.8
|
1.0
|
CG
|
B:LEU72
|
4.4
|
41.6
|
1.0
|
CG2
|
B:VAL38
|
4.4
|
33.7
|
1.0
|
CD2
|
B:LEU72
|
4.5
|
47.0
|
1.0
|
CB
|
B:VAL167
|
4.6
|
39.3
|
1.0
|
CB
|
B:VAL82
|
4.7
|
38.5
|
1.0
|
CG2
|
B:THR84
|
4.7
|
44.3
|
1.0
|
ND1
|
B:HIS201
|
4.8
|
45.5
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 3tdx
Go back to
Chlorine Binding Sites List in 3tdx
Chlorine binding site 3 out
of 5 in the Crystal Structure of Hsc L82V
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Hsc L82V within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl267
b:70.9
occ:1.00
|
NE2
|
C:HIS201
|
3.1
|
54.3
|
1.0
|
OG1
|
C:THR84
|
3.1
|
57.4
|
1.0
|
CD1
|
C:LEU72
|
3.6
|
45.1
|
1.0
|
CG1
|
C:VAL167
|
3.6
|
46.0
|
1.0
|
CE1
|
C:HIS201
|
3.7
|
51.8
|
1.0
|
CG2
|
C:VAL82
|
4.0
|
43.4
|
1.0
|
CG1
|
C:VAL82
|
4.1
|
39.4
|
1.0
|
CB
|
C:THR84
|
4.2
|
63.9
|
1.0
|
CD2
|
C:HIS201
|
4.3
|
57.2
|
1.0
|
CG
|
C:LEU72
|
4.3
|
43.1
|
1.0
|
CB
|
C:LEU72
|
4.3
|
36.0
|
1.0
|
CG2
|
C:VAL167
|
4.3
|
46.6
|
1.0
|
CD2
|
C:LEU72
|
4.4
|
42.3
|
1.0
|
CG2
|
C:VAL38
|
4.5
|
39.4
|
1.0
|
CB
|
C:VAL167
|
4.6
|
48.5
|
1.0
|
CB
|
C:VAL82
|
4.6
|
47.4
|
1.0
|
CA
|
C:LEU72
|
4.9
|
40.3
|
1.0
|
CG2
|
C:THR84
|
5.0
|
64.1
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 3tdx
Go back to
Chlorine Binding Sites List in 3tdx
Chlorine binding site 4 out
of 5 in the Crystal Structure of Hsc L82V
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Hsc L82V within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl267
b:55.2
occ:1.00
|
OG1
|
D:THR84
|
2.9
|
48.6
|
1.0
|
NE2
|
D:HIS201
|
3.0
|
43.6
|
1.0
|
CE1
|
D:HIS201
|
3.6
|
45.4
|
1.0
|
CG1
|
D:VAL167
|
3.7
|
36.9
|
1.0
|
CD1
|
D:LEU72
|
3.8
|
42.5
|
1.0
|
CG1
|
D:VAL82
|
4.1
|
36.2
|
1.0
|
CG2
|
D:VAL82
|
4.1
|
42.2
|
1.0
|
CB
|
D:THR84
|
4.1
|
47.0
|
1.0
|
CG2
|
D:VAL167
|
4.1
|
38.0
|
1.0
|
CD2
|
D:HIS201
|
4.2
|
50.1
|
1.0
|
CD2
|
D:LEU72
|
4.4
|
40.1
|
1.0
|
CG
|
D:LEU72
|
4.4
|
45.5
|
1.0
|
CB
|
D:LEU72
|
4.4
|
37.0
|
1.0
|
CG2
|
D:VAL38
|
4.5
|
40.5
|
1.0
|
CB
|
D:VAL167
|
4.6
|
43.5
|
1.0
|
CG2
|
D:THR84
|
4.6
|
42.9
|
1.0
|
CB
|
D:VAL82
|
4.7
|
41.8
|
1.0
|
ND1
|
D:HIS201
|
4.9
|
46.9
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 3tdx
Go back to
Chlorine Binding Sites List in 3tdx
Chlorine binding site 5 out
of 5 in the Crystal Structure of Hsc L82V
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Hsc L82V within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl268
b:57.8
occ:1.00
|
OG1
|
E:THR84
|
3.0
|
50.6
|
1.0
|
NE2
|
E:HIS201
|
3.1
|
41.8
|
1.0
|
CD1
|
E:LEU72
|
3.7
|
39.7
|
1.0
|
CG1
|
E:VAL167
|
3.7
|
41.4
|
1.0
|
CE1
|
E:HIS201
|
3.7
|
40.1
|
1.0
|
CG1
|
E:VAL82
|
3.8
|
40.7
|
1.0
|
CB
|
E:THR84
|
4.0
|
52.2
|
1.0
|
CG2
|
E:VAL82
|
4.1
|
43.4
|
1.0
|
CD2
|
E:HIS201
|
4.3
|
47.4
|
1.0
|
CG
|
E:LEU72
|
4.3
|
43.4
|
1.0
|
CG2
|
E:VAL167
|
4.4
|
40.3
|
1.0
|
CD2
|
E:LEU72
|
4.4
|
38.8
|
1.0
|
CB
|
E:LEU72
|
4.4
|
36.1
|
1.0
|
CG2
|
E:VAL38
|
4.4
|
40.8
|
1.0
|
CB
|
E:VAL82
|
4.5
|
44.1
|
1.0
|
CG2
|
E:THR84
|
4.6
|
47.3
|
1.0
|
CB
|
E:VAL167
|
4.7
|
46.1
|
1.0
|
ND1
|
E:HIS201
|
5.0
|
46.5
|
1.0
|
|
Reference:
B.K.Czyzewski,
D.N.Wang.
Identification and Characterization of A Bacterial Hydrosulphide Ion Channel. Nature V. 483 494 2012.
ISSN: ISSN 0028-0836
PubMed: 22407320
DOI: 10.1038/NATURE10881
Page generated: Sun Jul 21 05:07:06 2024
|