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Chlorine in PDB 3tdx: Crystal Structure of Hsc L82V

Protein crystallography data

The structure of Crystal Structure of Hsc L82V, PDB code: 3tdx was solved by B.K.Czyzewski, D.-N.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.69 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 99.012, 118.661, 151.343, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 20.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Hsc L82V (pdb code 3tdx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of Hsc L82V, PDB code: 3tdx:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 3tdx

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Chlorine binding site 1 out of 5 in the Crystal Structure of Hsc L82V


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Hsc L82V within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl268

b:56.4
occ:1.00
NE2 A:HIS201 3.0 45.8 1.0
OG1 A:THR84 3.0 43.5 1.0
CG1 A:VAL167 3.6 31.0 1.0
CE1 A:HIS201 3.7 50.3 1.0
CD1 A:LEU72 3.7 35.1 1.0
CG1 A:VAL82 4.1 39.3 1.0
CG2 A:VAL82 4.1 38.8 1.0
CG2 A:VAL167 4.1 33.4 1.0
CD2 A:HIS201 4.1 47.0 1.0
CB A:THR84 4.2 48.7 1.0
CD2 A:LEU72 4.4 42.0 1.0
CG A:LEU72 4.4 35.1 1.0
CB A:LEU72 4.4 32.2 1.0
CB A:VAL167 4.5 37.6 1.0
CG2 A:VAL38 4.6 32.4 1.0
CB A:VAL82 4.7 43.6 1.0
CG2 A:THR84 4.8 44.7 1.0
ND1 A:HIS201 4.9 48.0 1.0

Chlorine binding site 2 out of 5 in 3tdx

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Chlorine binding site 2 out of 5 in the Crystal Structure of Hsc L82V


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Hsc L82V within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl267

b:56.4
occ:1.00
OG1 B:THR84 2.9 44.8 1.0
NE2 B:HIS201 3.0 46.4 1.0
CE1 B:HIS201 3.6 43.9 1.0
CD1 B:LEU72 3.7 41.4 1.0
CG1 B:VAL167 3.7 30.4 1.0
CG1 B:VAL82 4.0 36.4 1.0
CG2 B:VAL82 4.1 43.3 1.0
CD2 B:HIS201 4.1 45.5 1.0
CB B:THR84 4.2 48.0 1.0
CG2 B:VAL167 4.2 32.5 1.0
CB B:LEU72 4.3 37.8 1.0
CG B:LEU72 4.4 41.6 1.0
CG2 B:VAL38 4.4 33.7 1.0
CD2 B:LEU72 4.5 47.0 1.0
CB B:VAL167 4.6 39.3 1.0
CB B:VAL82 4.7 38.5 1.0
CG2 B:THR84 4.7 44.3 1.0
ND1 B:HIS201 4.8 45.5 1.0

Chlorine binding site 3 out of 5 in 3tdx

Go back to Chlorine Binding Sites List in 3tdx
Chlorine binding site 3 out of 5 in the Crystal Structure of Hsc L82V


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Hsc L82V within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl267

b:70.9
occ:1.00
NE2 C:HIS201 3.1 54.3 1.0
OG1 C:THR84 3.1 57.4 1.0
CD1 C:LEU72 3.6 45.1 1.0
CG1 C:VAL167 3.6 46.0 1.0
CE1 C:HIS201 3.7 51.8 1.0
CG2 C:VAL82 4.0 43.4 1.0
CG1 C:VAL82 4.1 39.4 1.0
CB C:THR84 4.2 63.9 1.0
CD2 C:HIS201 4.3 57.2 1.0
CG C:LEU72 4.3 43.1 1.0
CB C:LEU72 4.3 36.0 1.0
CG2 C:VAL167 4.3 46.6 1.0
CD2 C:LEU72 4.4 42.3 1.0
CG2 C:VAL38 4.5 39.4 1.0
CB C:VAL167 4.6 48.5 1.0
CB C:VAL82 4.6 47.4 1.0
CA C:LEU72 4.9 40.3 1.0
CG2 C:THR84 5.0 64.1 1.0

Chlorine binding site 4 out of 5 in 3tdx

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Chlorine binding site 4 out of 5 in the Crystal Structure of Hsc L82V


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Hsc L82V within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl267

b:55.2
occ:1.00
OG1 D:THR84 2.9 48.6 1.0
NE2 D:HIS201 3.0 43.6 1.0
CE1 D:HIS201 3.6 45.4 1.0
CG1 D:VAL167 3.7 36.9 1.0
CD1 D:LEU72 3.8 42.5 1.0
CG1 D:VAL82 4.1 36.2 1.0
CG2 D:VAL82 4.1 42.2 1.0
CB D:THR84 4.1 47.0 1.0
CG2 D:VAL167 4.1 38.0 1.0
CD2 D:HIS201 4.2 50.1 1.0
CD2 D:LEU72 4.4 40.1 1.0
CG D:LEU72 4.4 45.5 1.0
CB D:LEU72 4.4 37.0 1.0
CG2 D:VAL38 4.5 40.5 1.0
CB D:VAL167 4.6 43.5 1.0
CG2 D:THR84 4.6 42.9 1.0
CB D:VAL82 4.7 41.8 1.0
ND1 D:HIS201 4.9 46.9 1.0

Chlorine binding site 5 out of 5 in 3tdx

Go back to Chlorine Binding Sites List in 3tdx
Chlorine binding site 5 out of 5 in the Crystal Structure of Hsc L82V


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Hsc L82V within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl268

b:57.8
occ:1.00
OG1 E:THR84 3.0 50.6 1.0
NE2 E:HIS201 3.1 41.8 1.0
CD1 E:LEU72 3.7 39.7 1.0
CG1 E:VAL167 3.7 41.4 1.0
CE1 E:HIS201 3.7 40.1 1.0
CG1 E:VAL82 3.8 40.7 1.0
CB E:THR84 4.0 52.2 1.0
CG2 E:VAL82 4.1 43.4 1.0
CD2 E:HIS201 4.3 47.4 1.0
CG E:LEU72 4.3 43.4 1.0
CG2 E:VAL167 4.4 40.3 1.0
CD2 E:LEU72 4.4 38.8 1.0
CB E:LEU72 4.4 36.1 1.0
CG2 E:VAL38 4.4 40.8 1.0
CB E:VAL82 4.5 44.1 1.0
CG2 E:THR84 4.6 47.3 1.0
CB E:VAL167 4.7 46.1 1.0
ND1 E:HIS201 5.0 46.5 1.0

Reference:

B.K.Czyzewski, D.N.Wang. Identification and Characterization of A Bacterial Hydrosulphide Ion Channel. Nature V. 483 494 2012.
ISSN: ISSN 0028-0836
PubMed: 22407320
DOI: 10.1038/NATURE10881
Page generated: Sat Dec 12 10:11:53 2020

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