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Chlorine in PDB 3tfc: 1.95 Angstrom Crystal Structure of A Bifunctional 3-Deoxy-7- Phosphoheptulonate Synthase/Chorismate Mutase (Aroa) From Listeria Monocytogenes Egd-E in Complex with Phosphoenolpyruvate

Protein crystallography data

The structure of 1.95 Angstrom Crystal Structure of A Bifunctional 3-Deoxy-7- Phosphoheptulonate Synthase/Chorismate Mutase (Aroa) From Listeria Monocytogenes Egd-E in Complex with Phosphoenolpyruvate, PDB code: 3tfc was solved by S.H.Light, G.Minasov, A.S.Halavaty, L.Shuvalova, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.95
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 110.161, 110.890, 80.230, 90.00, 127.21, 90.00
R / Rfree (%) 17.5 / 20.5

Other elements in 3tfc:

The structure of 1.95 Angstrom Crystal Structure of A Bifunctional 3-Deoxy-7- Phosphoheptulonate Synthase/Chorismate Mutase (Aroa) From Listeria Monocytogenes Egd-E in Complex with Phosphoenolpyruvate also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 1.95 Angstrom Crystal Structure of A Bifunctional 3-Deoxy-7- Phosphoheptulonate Synthase/Chorismate Mutase (Aroa) From Listeria Monocytogenes Egd-E in Complex with Phosphoenolpyruvate (pdb code 3tfc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the 1.95 Angstrom Crystal Structure of A Bifunctional 3-Deoxy-7- Phosphoheptulonate Synthase/Chorismate Mutase (Aroa) From Listeria Monocytogenes Egd-E in Complex with Phosphoenolpyruvate, PDB code: 3tfc:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 3tfc

Go back to Chlorine Binding Sites List in 3tfc
Chlorine binding site 1 out of 3 in the 1.95 Angstrom Crystal Structure of A Bifunctional 3-Deoxy-7- Phosphoheptulonate Synthase/Chorismate Mutase (Aroa) From Listeria Monocytogenes Egd-E in Complex with Phosphoenolpyruvate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1.95 Angstrom Crystal Structure of A Bifunctional 3-Deoxy-7- Phosphoheptulonate Synthase/Chorismate Mutase (Aroa) From Listeria Monocytogenes Egd-E in Complex with Phosphoenolpyruvate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl363

b:35.9
occ:0.40
CL A:CL363 0.0 35.9 0.4
CL A:CL363 1.7 56.8 0.6
O A:HOH512 2.8 45.4 1.0
N A:THR158 3.0 31.2 1.0
NE A:ARG157 3.1 38.0 1.0
CA A:ARG157 3.5 32.6 1.0
OG1 A:THR158 3.5 31.6 1.0
C A:ARG157 3.7 32.0 1.0
CB A:ARG157 3.8 32.7 1.0
CB A:THR158 3.8 31.5 1.0
CD A:ARG157 3.9 36.2 1.0
NH2 A:ARG157 3.9 41.1 1.0
CZ A:ARG157 3.9 42.2 1.0
CA A:THR158 4.0 30.6 1.0
CG A:ARG157 4.4 35.5 1.0
O A:PRO156 4.5 41.5 1.0
O A:HOH531 4.6 48.9 1.0
OD2 A:ASP162 4.7 44.9 1.0
N A:SER159 4.7 30.2 1.0
N A:ARG157 4.7 34.5 1.0
O A:ARG157 4.9 29.0 1.0
C A:THR158 4.9 30.9 1.0

Chlorine binding site 2 out of 3 in 3tfc

Go back to Chlorine Binding Sites List in 3tfc
Chlorine binding site 2 out of 3 in the 1.95 Angstrom Crystal Structure of A Bifunctional 3-Deoxy-7- Phosphoheptulonate Synthase/Chorismate Mutase (Aroa) From Listeria Monocytogenes Egd-E in Complex with Phosphoenolpyruvate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 1.95 Angstrom Crystal Structure of A Bifunctional 3-Deoxy-7- Phosphoheptulonate Synthase/Chorismate Mutase (Aroa) From Listeria Monocytogenes Egd-E in Complex with Phosphoenolpyruvate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl363

b:56.8
occ:0.60
CL A:CL363 0.0 56.8 0.6
CL A:CL363 1.7 35.9 0.4
OG1 A:THR158 3.9 31.6 1.0
NE A:ARG157 4.0 38.0 1.0
N A:THR158 4.3 31.2 1.0
O A:HOH512 4.4 45.4 1.0
NH2 A:ARG157 4.5 41.1 1.0
CB A:THR158 4.6 31.5 1.0
CZ A:ARG157 4.7 42.2 1.0
CA A:ARG157 4.8 32.6 1.0
CD A:ARG157 4.8 36.2 1.0
NH2 A:ARG210 4.9 41.1 1.0
O A:PRO156 4.9 41.5 1.0

Chlorine binding site 3 out of 3 in 3tfc

Go back to Chlorine Binding Sites List in 3tfc
Chlorine binding site 3 out of 3 in the 1.95 Angstrom Crystal Structure of A Bifunctional 3-Deoxy-7- Phosphoheptulonate Synthase/Chorismate Mutase (Aroa) From Listeria Monocytogenes Egd-E in Complex with Phosphoenolpyruvate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 1.95 Angstrom Crystal Structure of A Bifunctional 3-Deoxy-7- Phosphoheptulonate Synthase/Chorismate Mutase (Aroa) From Listeria Monocytogenes Egd-E in Complex with Phosphoenolpyruvate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl363

b:60.3
occ:1.00
O B:HOH432 3.3 37.0 1.0
NE B:ARG157 3.4 30.5 1.0
N B:THR158 3.5 27.4 1.0
OG1 B:THR158 3.7 29.8 1.0
CA B:ARG157 3.9 28.9 1.0
NH2 B:ARG157 4.0 36.5 1.0
CB B:THR158 4.1 29.1 1.0
C B:ARG157 4.2 27.8 1.0
CZ B:ARG157 4.2 34.4 1.0
CB B:ARG157 4.3 29.0 1.0
CD B:ARG157 4.3 30.5 1.0
CA B:THR158 4.4 28.0 1.0
O B:HOH534 4.5 48.4 1.0
O B:HOH498 4.5 52.4 1.0
O B:PRO156 4.7 34.3 1.0
CG B:ARG157 4.9 30.6 1.0
OD2 B:ASP162 5.0 37.1 1.0

Reference:

S.H.Light, A.S.Halavaty, G.Minasov, L.Shuvalova, W.F.Anderson. Structural Analysis of A 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase with An N-Terminal Chorismate Mutase-Like Regulatory Domain. Protein Sci. V. 21 887 2012.
ISSN: ISSN 0961-8368
PubMed: 22505283
DOI: 10.1002/PRO.2075
Page generated: Sun Jul 21 05:07:58 2024

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