Atomistry » Chlorine » PDB 3th2-3tnl » 3tmu
Atomistry »
  Chlorine »
    PDB 3th2-3tnl »
      3tmu »

Chlorine in PDB 3tmu: X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed)

Enzymatic activity of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed)

All present enzymatic activity of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed):
3.2.1.17;

Protein crystallography data

The structure of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed), PDB code: 3tmu was solved by J.Kmetko, M.A.Warkentin, U.Englich, R.E.Thorne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.80 / 1.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 80.050, 80.050, 38.636, 90.00, 90.00, 90.00
R / Rfree (%) 15.1 / 19.5

Other elements in 3tmu:

The structure of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed) also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed) (pdb code 3tmu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed), PDB code: 3tmu:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 3tmu

Go back to Chlorine Binding Sites List in 3tmu
Chlorine binding site 1 out of 8 in the X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1130

b:25.5
occ:1.00
OH A:TYR23 3.0 12.6 1.0
O A:HOH2031 3.6 20.9 1.0
CZ A:TYR23 3.8 10.6 1.0
CE2 A:TYR23 3.8 10.4 1.0
CA A:GLY104 4.2 13.8 1.0
O A:ARG21 4.8 18.5 1.0
N A:GLY104 4.9 13.2 1.0
CE1 A:TYR23 5.0 12.1 1.0

Chlorine binding site 2 out of 8 in 3tmu

Go back to Chlorine Binding Sites List in 3tmu
Chlorine binding site 2 out of 8 in the X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1131

b:34.4
occ:1.00
OG A:SER24 3.0 19.2 1.0
N A:GLY26 3.1 12.2 1.0
O A:HOH2151 3.2 47.3 1.0
CB A:SER24 3.5 16.0 1.0
CA A:GLY26 3.5 12.2 1.0
CA A:GLN121 3.9 23.4 1.0
CD1 A:ILE124 4.0 26.7 1.0
N A:LEU25 4.1 14.1 1.0
N A:GLN121 4.2 21.0 1.0
C A:SER24 4.2 16.1 1.0
C A:LEU25 4.3 13.5 1.0
CB A:GLN121 4.3 25.9 1.0
CG1 A:ILE124 4.4 19.8 1.0
O A:VAL120 4.5 19.6 1.0
C A:VAL120 4.5 21.6 1.0
CA A:SER24 4.5 15.8 1.0
CG2 A:VAL120 4.5 19.9 1.0
CG A:GLN121 4.6 34.8 1.0
CA A:LEU25 4.6 13.9 1.0
C A:GLY26 4.7 13.1 1.0
O A:SER24 4.7 13.5 1.0
N A:ASN27 4.8 10.9 1.0
CB A:LEU25 5.0 14.9 1.0

Chlorine binding site 3 out of 8 in 3tmu

Go back to Chlorine Binding Sites List in 3tmu
Chlorine binding site 3 out of 8 in the X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1132

b:43.5
occ:1.00
O A:HOH2076 2.8 16.7 1.0
N A:THR69 3.2 18.2 1.0
O A:THR69 3.3 21.6 1.0
OD1 A:ASN65 3.4 26.4 1.0
O A:HOH2075 3.5 40.9 1.0
N A:ARG68 3.6 16.0 1.0
N A:GLY67 3.7 14.7 1.0
C A:GLY67 3.7 19.0 1.0
C A:THR69 3.7 21.9 1.0
CA A:GLY67 3.7 16.8 1.0
OG A:SER72 3.9 27.6 1.0
CA A:THR69 3.9 19.5 1.0
O A:HOH2081 4.0 27.3 1.0
C A:ARG68 4.2 18.4 1.0
OD1 A:ASP66 4.2 14.1 1.0
CB A:THR69 4.3 18.5 1.0
CA A:ARG68 4.4 17.7 1.0
O A:GLY67 4.5 20.1 1.0
N A:PRO70 4.5 26.0 1.0
N A:ASP66 4.6 12.2 1.0
CG A:ASN65 4.6 21.9 1.0
C A:ASP66 4.7 15.0 1.0
NA A:NA1138 4.8 22.1 1.0
O A:HOH2077 4.8 39.2 1.0
OG1 A:THR69 4.8 16.9 1.0
CA A:PRO70 4.9 28.4 1.0

Chlorine binding site 4 out of 8 in 3tmu

Go back to Chlorine Binding Sites List in 3tmu
Chlorine binding site 4 out of 8 in the X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1133

b:58.4
occ:1.00
N A:ILE88 3.3 16.8 1.0
O A:HOH2096 3.7 32.3 1.0
CG1 A:ILE88 3.7 18.7 1.0
CA A:ASP87 3.9 20.4 1.0
OD1 A:ASP87 4.0 26.7 1.0
C A:ASP87 4.1 18.9 1.0
O A:SER86 4.2 23.4 1.0
CE1 A:HIS15 4.2 24.8 1.0
CA A:ILE88 4.4 17.0 1.0
CB A:ILE88 4.4 15.3 1.0
CB A:ALA11 4.5 18.2 1.0
CG2 A:ILE88 4.5 14.7 1.0
CZ A:PHE3 4.6 19.1 1.0
CD1 A:ILE88 4.6 18.5 1.0
CG A:ASP87 4.6 28.8 1.0
NH1 A:ARG14 4.7 46.1 1.0
ND1 A:HIS15 4.8 27.9 1.0
CB A:ASP87 4.8 21.4 1.0
N A:ASP87 4.9 20.2 1.0
N A:THR89 5.0 17.1 1.0

Chlorine binding site 5 out of 8 in 3tmu

Go back to Chlorine Binding Sites List in 3tmu
Chlorine binding site 5 out of 8 in the X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1134

b:58.3
occ:1.00
O A:HOH2008 3.8 38.6 1.0
CE2 A:PHE38 3.9 19.1 1.0
CD A:ARG5 4.2 20.7 1.0
CZ3 A:TRP123 4.2 20.8 1.0
NZ A:LYS33 4.3 30.6 1.0
CD A:LYS33 4.3 21.8 1.0
CB A:ARG5 4.4 19.1 1.0
CE A:LYS33 4.6 30.6 1.0
CZ A:PHE38 4.6 14.6 1.0
CG A:ARG5 4.8 16.8 1.0
O A:HOH2154 4.8 49.3 1.0
NE A:ARG5 4.8 28.7 1.0
CD2 A:PHE38 4.9 14.5 1.0

Chlorine binding site 6 out of 8 in 3tmu

Go back to Chlorine Binding Sites List in 3tmu
Chlorine binding site 6 out of 8 in the X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1135

b:90.8
occ:1.00
ND2 A:ASN65 3.3 34.8 1.0
CB A:PRO79 3.6 17.4 1.0
O A:HOH2084 3.7 43.7 1.0
O A:HOH2074 3.9 22.1 1.0
CA A:PRO79 4.1 15.9 1.0
O A:ASN65 4.2 13.1 1.0
CG A:ASN65 4.3 21.9 1.0
CG A:PRO79 4.4 20.0 1.0
CB A:ASN65 4.5 14.0 1.0
N A:PRO79 4.7 16.5 1.0
C A:ASN65 5.0 12.3 1.0
CD A:PRO79 5.0 17.4 1.0

Chlorine binding site 7 out of 8 in 3tmu

Go back to Chlorine Binding Sites List in 3tmu
Chlorine binding site 7 out of 8 in the X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1136

b:72.1
occ:1.00
N A:ASN74 3.1 22.2 1.0
CB A:ARG73 3.6 26.9 1.0
C A:ASN74 3.8 18.1 1.0
CA A:ARG73 3.9 25.7 1.0
O A:ASN74 3.9 17.8 1.0
CA A:ASN74 4.0 19.7 1.0
C A:ARG73 4.0 24.7 1.0
NE A:ARG73 4.0 55.5 1.0
N A:LEU75 4.2 19.7 1.0
CB A:ASN74 4.3 18.6 1.0
CD2 A:LEU75 4.5 29.1 1.0
CD A:ARG73 4.6 45.7 1.0
CA A:LEU75 4.7 20.0 1.0
CG A:ARG73 4.7 34.2 1.0
NH2 A:ARG73 4.8 59.8 1.0
CG A:LEU75 4.8 25.1 1.0
CZ A:ARG73 4.8 59.7 1.0
O A:HOH2148 5.0 47.4 1.0

Chlorine binding site 8 out of 8 in 3tmu

Go back to Chlorine Binding Sites List in 3tmu
Chlorine binding site 8 out of 8 in the X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of X-Ray Radiation Damage to Hewl Crystals Soaked in 100MM Sodium Nitrate (Undosed) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1137

b:48.8
occ:1.00
NH1 A:ARG68 3.1 26.6 1.0
CD A:ARG68 3.7 19.6 1.0
CZ A:ARG68 4.2 24.2 1.0
NE A:ARG68 4.4 24.1 1.0
CG A:ARG68 4.9 17.9 1.0
CB A:ARG68 5.0 17.8 1.0

Reference:

J.Kmetko, M.Warkentin, U.Englich, R.E.Thorne. Can Radiation Damage to Protein Crystals Be Reduced Using Small-Molecule Compounds? Acta Crystallogr.,Sect.D V. 67 881 2011.
ISSN: ISSN 0907-4449
PubMed: 21931220
DOI: 10.1107/S0907444911032835
Page generated: Sat Dec 12 10:12:39 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy